| Name | pysubebm JSON |
| Version |
0.2.9
JSON |
| download |
| home_page | None |
| Summary | Subtype Event-Based Modeling for Disease Progression |
| upload_time | 2025-09-01 23:02:16 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.7 |
| license | None |
| keywords |
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# `pysubebm`
## Installation
```bash
pip install git+https://github.com/noxtoby/awkde
pip install git+https://github.com/hongtaoh/ucl_kde_ebm
pip install git+https://github.com/hongtaoh/pySuStaIn
```
```bash
pip install pysubebm
```
## Changelogs
- 2025-08-21 (V 0.0.3)
- Did the `generate_data.py`.
- 2025-08-22 (V 0.0.5)
- Did the `mh.py`
- Correct conjugate_priors implementation.
- 2025-08-23 (V 0.1.2)
- Improved functions in `utils.py`.
- 2025-08-29 (V 0.1.3)
- Didn't change much.
- 2025-08-30 (V 0.1.8)
- Optimized `compute_likelihood_and_posteriors` such that we only calculate healthy participants' ln likelihood once every time.
- Made sure subtype assignment accuracy does not apply to healthy participants at all.
- Fixed a major bug in data generation. The very low subtype assignment might be due to this error.
- Included both subtype accuracy in `run.py`.
- 2025-08-31 (V 0.2.5)
- Resacle event times and disease stages for exp7-9 such that max(event_times) = max_stage -1, and max(disease_stages) = max_stage.
- Changed the experiments and some of the implementation.
- Forcing `max(event_times) = max_stage -1`, but not forcing disease stages.
- 2025-09-01 (V 0.2.9)
- REMOVED THE Forcing `max(event_times) = max_stage -1`
- Modified the `run.py`.
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