# python-multem
> Python wrapper for MULTEM
[](https://lgtm.com/projects/g/rosalindfranklininstitute/python-multem/context:python)
[](https://lgtm.com/projects/g/rosalindfranklininstitute/python-multem/alerts/)
[](https://github.com/rosalindfranklininstitute/python-multem/actions/workflows/python-package.yml)
[](https://github.com/rosalindfranklininstitute/python-multem/actions/workflows/python-publish.yml)
[](https://zenodo.org/badge/latestdoi/201027691)
## Installation
To install from the github repository do the following
```sh
export CUDACXX=${PATH_TO_CUDA}/bin/nvcc
python -m pip install git+https://github.com/rosalindfranklininstitute/python-multem.git@master
```
To install from source, clone this repository. The repository has a submodule
for pybind11 so after cloning the repository run
```sh
git submodule update --init --recursive
```
Then do the following:
```sh
export CUDACXX=${PATH_TO_CUDA}/bin/nvcc
python -m pip install .
```
If you would like to run the tests then, clone this repository and then do the following:
```sh
export CUDACXX=${PATH_TO_CUDA}/bin/nvcc
python -m pip install .[test]
```
## Installation for developers
To install for development, clone this repository and then do the following:
```sh
export CUDACXX=${PATH_TO_CUDA}/bin/nvcc
python -m pip install -e .
```
## Testing
To run the tests, follow the installation instructions and execute the following:
```sh
pytest
```
## Issues
Please use the [GitHub issue tracker](https://github.com/rosalindfranklininstitute/python-multem/issues) to submit bugs or request features.
## License
Copyright Diamond Light Source, 2019.
Distributed under the terms of the GPLv3 license, python-multem is free and open source software.
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