| Name | quicksectx JSON |
| Version |
0.4.0
JSON |
| download |
| home_page | https://github.com/jianlins/quicksectx |
| Summary | Quicksect is a fast python / cython implementation of interval search. |
| upload_time | 2024-10-12 06:17:36 |
| maintainer | None |
| docs_url | None |
| author | Brent Pedersen,Jianlin Shi |
| requires_python | >=3.8 |
| license | The MIT License (MIT) Copyright (c) 2016 Brent Pedersen Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
| keywords |
quicksectx
interval search
interval tree
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
Cython
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
Quicksect
=========
Description
-----------
Quicksect is a fast python / cython implementation of interval search based on the pure python version in
`bx-python <http://bx-python.trac.bx.psu.edu/>`__
I pulled it out, optimized and converted to cython and James Taylor has incoporated it back into bx-python
with his improvements.
I have brought this project back from the dead because I want a fast, simple, no-dependencies Interval
tree.
(https://github.com/brentp/quicksect)
Extended with removal operations and allows pretty print to display tree structure (By Jianlin)
License is MIT.
Installation
------------
pip install quicksectx
Use
---
To use extended quicksect(quicksectx):
>>> from quicksectx import IntervalNode, IntervalTree, Interval
>>> tree = IntervalTree()
>>> tree.add(1, 3, 100)
>>> tree.add(3, 7, 110)
>>> tree.add(2, 5, 120)
>>> tree.add(4, 6, 130)
>>> print(tree.pretty_print())
Inv(1, 3, d=100)
r: Inv(3, 7, d=110)
l: Inv(2, 5, d=120)
r: Inv(4, 6, d=130)
>>> print(tree.find(Interval(2, 5)))
[Inv(1, 3, d=100), Inv(3, 7, d=110), Inv(2, 5, d=120), Inv(4, 6, d=130)]
>>> tree.remove(Interval(2, 5))
>>> print(tree.find(Interval(2, 5)))
[Inv(1, 3, d=100), Inv(3, 7, d=110), Inv(4, 6, d=130)]
To use traditional quicksect, you can still using the same syntax:
>>> from quicksect import IntervalNode, Interval, IntervalTree
Most common use will be via IntervalTree:
>>> tree = IntervalTree()
>>> tree.add(23, 45)
>>> tree.add(55, 66)
>>> tree.search(46, 47)
[]
>>> tree.search(44, 56)
[Interval(55, 66), Interval(23, 45)]
>>> tree.insert(Interval(88, 444, 'a'))
>>> res = tree.find(Interval(99, 100, 'b'))
>>> res
[Interval(88, 444)]
>>> res[0].start, res[0].end, res[0].data
(88, 444, 'a')
Thats pretty much everything you need to know about the tree.
Test
----
$ python setup.py test
Low-Level
+++++++++
In some cases, users may want to utilize the lower-level interface that accesses
the nodes of the tree:
>>> inter = IntervalNode(Interval(22, 33))
>>> inter = inter.insert(Interval(44, 55))
>>> inter.intersect(24, 26)
[Interval(22, 33)]
>>> inter.left(Interval(34, 35), n=1)
[Interval(22, 33)]
>>> inter.right(Interval(34, 35), n=1)
[Interval(44, 55)]
Since 0.3.7, you can use python's native pickle to pickle an IntervalTree object. For details, check
`test_serialization.py <https://github.com/jianlins/quicksectx/blob/master/tests/test_serialization.py>`__
For Dev
-------
Now the version specification has been integrated with setup.py and pyproject.toml. To update versions, only need to change the __version__ in `quicksectx/__init__.py <https://github.com/jianlins/quicksectx/blob/master/quicksectx/__init__.py>`__
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"description": "Quicksect\n=========\n\nDescription\n-----------\n\n\nQuicksect is a fast python / cython implementation of interval search based on the pure python version in \n`bx-python <http://bx-python.trac.bx.psu.edu/>`__ \nI pulled it out, optimized and converted to cython and James Taylor has incoporated it back into bx-python\nwith his improvements.\n\nI have brought this project back from the dead because I want a fast, simple, no-dependencies Interval\ntree.\n\n(https://github.com/brentp/quicksect)\n\nExtended with removal operations and allows pretty print to display tree structure (By Jianlin)\n\n\nLicense is MIT.\n\nInstallation\n------------\n\n pip install quicksectx\n\nUse\n---\n\nTo use extended quicksect(quicksectx):\n\n >>> from quicksectx import IntervalNode, IntervalTree, Interval\n >>> tree = IntervalTree()\n >>> tree.add(1, 3, 100)\n >>> tree.add(3, 7, 110)\n >>> tree.add(2, 5, 120)\n >>> tree.add(4, 6, 130)\n >>> print(tree.pretty_print())\n Inv(1, 3, d=100)\n r: Inv(3, 7, d=110)\n l: Inv(2, 5, d=120)\n r: Inv(4, 6, d=130)\n >>> print(tree.find(Interval(2, 5)))\n [Inv(1, 3, d=100), Inv(3, 7, d=110), Inv(2, 5, d=120), Inv(4, 6, d=130)]\n >>> tree.remove(Interval(2, 5))\n >>> print(tree.find(Interval(2, 5)))\n [Inv(1, 3, d=100), Inv(3, 7, d=110), Inv(4, 6, d=130)]\n \n\nTo use traditional quicksect, you can still using the same syntax:\n\n >>> from quicksect import IntervalNode, Interval, IntervalTree\n\nMost common use will be via IntervalTree:\n\n >>> tree = IntervalTree()\n >>> tree.add(23, 45)\n >>> tree.add(55, 66)\n >>> tree.search(46, 47)\n []\n >>> tree.search(44, 56)\n [Interval(55, 66), Interval(23, 45)]\n\n >>> tree.insert(Interval(88, 444, 'a'))\n >>> res = tree.find(Interval(99, 100, 'b'))\n >>> res\n [Interval(88, 444)]\n >>> res[0].start, res[0].end, res[0].data\n (88, 444, 'a')\n\nThats pretty much everything you need to know about the tree.\n\n\nTest\n----\n\n$ python setup.py test\n\nLow-Level\n+++++++++\n\nIn some cases, users may want to utilize the lower-level interface that accesses\nthe nodes of the tree:\n\n >>> inter = IntervalNode(Interval(22, 33))\n >>> inter = inter.insert(Interval(44, 55))\n >>> inter.intersect(24, 26)\n [Interval(22, 33)]\n\n >>> inter.left(Interval(34, 35), n=1)\n [Interval(22, 33)]\n\n >>> inter.right(Interval(34, 35), n=1)\n [Interval(44, 55)]\n\n\nSince 0.3.7, you can use python's native pickle to pickle an IntervalTree object. For details, check \n`test_serialization.py <https://github.com/jianlins/quicksectx/blob/master/tests/test_serialization.py>`__\n\nFor Dev\n-------\n\nNow the version specification has been integrated with setup.py and pyproject.toml. To update versions, only need to change the __version__ in `quicksectx/__init__.py <https://github.com/jianlins/quicksectx/blob/master/quicksectx/__init__.py>`__\n",
"bugtrack_url": null,
"license": "The MIT License (MIT) Copyright (c) 2016 Brent Pedersen Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the \"Software\"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. ",
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