rcsb.utils.dssp

Name	rcsb.utils.dssp JSON
Version	0.11 JSON
	download
home_page	https://github.com/rcsb/py-rcsb_utils_dssp
Summary	RCSB Python DSSP Utilities
upload_time	2023-01-11 19:02:21
maintainer
docs_url	None
author	Dennis Piehl
requires_python
license	Apache 2.0
keywords
VCS
bugtrack_url
requirements	rcsb.utils.io rcsb.utils.multiproc
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # RCSB Python DSSP Utilities

[![Build Status](https://dev.azure.com/rcsb/RCSB%20PDB%20Python%20Projects/_apis/build/status/rcsb.py-rcsb_utils_dssp?branchName=master)](https://dev.azure.com/rcsb/RCSB%20PDB%20Python%20Projects/_build/latest?definitionId=&branchName=master)

## Introduction

This module contains utility methods for calculating DSSP secondary structure entries for models in the RCSB PDB archive.

### Installation

Download the library source software from the project repository:

```bash

git clone --recurse-submodules https://github.com/rcsb/py-rcsb_utils_dssp.git

```

**Important:** Setup will require an up-to-date version of [cmake](https://cmake.org/install/) to be installed on the machine and the executable to be in the system's PATH.

Optionally, run test suite (Python versions 3.9) using
[setuptools](https://setuptools.readthedocs.io/en/latest/) or
[tox](http://tox.readthedocs.io/en/latest/example/platform.html):

```bash
python setup.py test

or simply run

tox
```

Installation is via the program [pip](https://pypi.python.org/pypi/pip).

```bash
pip install rcsb.utils.dssp

or for the local repository:

pip install .
```

## References
* DSSP 4.0. Maarten L. Hekkelman, et al. https://github.com/PDB-REDO/dssp
* libcifpp. Maarten L. Hekkelman, et al. https://github.com/PDB-REDO/libcifpp

            

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