rcsb.workflow

Name	rcsb.workflow JSON
Version	0.60 JSON
	download
home_page	https://github.com/rcsb/py-rcsb_workflow
Summary	RCSB Python data processing and ETL/ELT workflow entry points
upload_time	2025-09-04 21:45:31
maintainer	None
docs_url	None
author	John Westbrook
requires_python	None
license	Apache 2.0
keywords
VCS
bugtrack_url
requirements	rcsb.utils.chem rcsb.utils.seq rcsb.utils.targets rcsb.utils.seqalign rcsb.utils.io rcsb.exdb rcsb.db requests mmcif
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # py-rcsb_workflow

[![Build Status](https://dev.azure.com/rcsb/RCSB%20PDB%20Python%20Projects/_apis/build/status/rcsb.py-rcsb_workflow?branchName=master)](https://dev.azure.com/rcsb/RCSB%20PDB%20Python%20Projects/_build/latest?definitionId=21&branchName=master)

## Introduction

RCSB Python workflow entry points for data processing and ETL/ELT operations.

### Installation

Download the library source software from the project repository:

```bash

git clone  --recurse-submodules https://github.com/rcsb/py-rcsb_workflow.git

# or to make sure the submodules are updated --
git submodule update --recursive --init
git submodule update --recursive --remote

```

Optionally, run test suite (Python versions 3.8) using
[setuptools](https://setuptools.readthedocs.io/en/latest/) or
[tox](http://tox.readthedocs.io/en/latest/example/platform.html):

```bash

  pip install -r requirements.txt
  python setup.py test

or simply run:

  tox
```

Installation is via the program [pip](https://pypi.python.org/pypi/pip).
```bash
pip install rcsb.workflow --extra-index-url https://pypi.anaconda.org/OpenEye/simple
```

To run tests from the source tree, the package must be installed in editable mode (i.e. -e):
```bash
pip install -e . --extra-index-url https://pypi.anaconda.org/OpenEye/simple
```

            

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