| Name | reprolab JSON |
| Version |
0.1.0
JSON |
| download |
| home_page | None |
| Summary | One step closer reproducible research |
| upload_time | 2025-08-05 20:04:11 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.9 |
| license | BSD 3-Clause License
Copyright (c) 2025, Piotr Witek
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| keywords |
jupyter
jupyterlab
jupyterlab-extension
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
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| coveralls test coverage |
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|
# ReproLab
[](/actions/workflows/build.yml)
One step closer to reproducible research
ReproLab is a JupyterLab extension that helps researchers create reproducible experiments by providing tools for:
- Experiment tracking and versioning
- Environment management and dependency freezing
- Data archiving and sharing
- Zenodo integration for publishing
## Requirements
- JupyterLab >= 4.0.0
- Python >= 3.9
- Node.js >= 16.0.0
## Quick Install
The easiest way to install ReproLab is using the provided installation script:
```bash
# Make the script executable (if needed)
chmod +x install.sh
# Run the installation script
./install.sh
```
## Manual Install
If you prefer to install manually:
```bash
# Install npm dependencies
npm install
# Build the extension
npm run build:prod
# Install the Python package
pip install -e .
```
## Usage
After installation, start JupyterLab:
```bash
jupyter lab
```
The ReproLab panel will appear in the left sidebar. You can use it to:
1. **Create Experiments**: Track and version your research experiments
2. **Manage Environments**: Create reproducible Python environments
3. **Archive Data**: Save and share your research data
4. **Publish to Zenodo**: Create packages ready for publication
## Uninstall
To remove the extension, execute:
```bash
pip uninstall reprolab
```
## Contributing
### Development install
Note: You will need NodeJS to build the extension package.
The `jlpm` command is JupyterLab's pinned version of
[yarn](https://yarnpkg.com/) that is installed with JupyterLab. You may use
`yarn` or `npm` in lieu of `jlpm` below.
```bash
# Clone the repo to your local environment
# Change directory to the reprolab directory
# Install package in development mode
pip install -e "."
# Link your development version of the extension with JupyterLab
jupyter labextension develop . --overwrite
# Rebuild extension Typescript source after making changes
jlpm build
```
You can watch the source directory and run JupyterLab at the same time in different terminals to watch for changes in the extension's source and automatically rebuild the extension.
```bash
# Watch the source directory in one terminal, automatically rebuilding when needed
jlpm watch
# Run JupyterLab in another terminal
jupyter lab
```
With the watch command running, every saved change will immediately be built locally and available in your running JupyterLab. Refresh JupyterLab to load the change in your browser (you may need to wait several seconds for the extension to be rebuilt).
By default, the `jlpm build` command generates the source maps for this extension to make it easier to debug using the browser dev tools. To also generate source maps for the JupyterLab core extensions, you can run the following command:
```bash
jupyter lab build --minimize=False
```
### Development uninstall
```bash
pip uninstall reprolab
```
In development mode, you will also need to remove the symlink created by `jupyter labextension develop`
command. To find its location, you can run `jupyter labextension list` to figure out where the `labextensions`
folder is located. Then you can remove the symlink named `reprolab` within that folder.
### Packaging the extension
See [RELEASE](RELEASE.md)
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"description": "# ReproLab\n\n[](/actions/workflows/build.yml)\n\nOne step closer to reproducible research\n\nReproLab is a JupyterLab extension that helps researchers create reproducible experiments by providing tools for:\n- Experiment tracking and versioning\n- Environment management and dependency freezing\n- Data archiving and sharing\n- Zenodo integration for publishing\n\n## Requirements\n\n- JupyterLab >= 4.0.0\n- Python >= 3.9\n- Node.js >= 16.0.0\n\n## Quick Install\n\nThe easiest way to install ReproLab is using the provided installation script:\n\n```bash\n# Make the script executable (if needed)\nchmod +x install.sh\n\n# Run the installation script\n./install.sh\n```\n\n## Manual Install\n\nIf you prefer to install manually:\n\n```bash\n# Install npm dependencies\nnpm install\n\n# Build the extension\nnpm run build:prod\n\n# Install the Python package\npip install -e .\n```\n\n## Usage\n\nAfter installation, start JupyterLab:\n\n```bash\njupyter lab\n```\n\nThe ReproLab panel will appear in the left sidebar. You can use it to:\n\n1. **Create Experiments**: Track and version your research experiments\n2. **Manage Environments**: Create reproducible Python environments\n3. **Archive Data**: Save and share your research data\n4. **Publish to Zenodo**: Create packages ready for publication\n\n## Uninstall\n\nTo remove the extension, execute:\n\n```bash\npip uninstall reprolab\n```\n\n## Contributing\n\n### Development install\n\nNote: You will need NodeJS to build the extension package.\n\nThe `jlpm` command is JupyterLab's pinned version of\n[yarn](https://yarnpkg.com/) that is installed with JupyterLab. You may use\n`yarn` or `npm` in lieu of `jlpm` below.\n\n```bash\n# Clone the repo to your local environment\n# Change directory to the reprolab directory\n# Install package in development mode\npip install -e \".\"\n# Link your development version of the extension with JupyterLab\njupyter labextension develop . --overwrite\n# Rebuild extension Typescript source after making changes\njlpm build\n```\n\nYou can watch the source directory and run JupyterLab at the same time in different terminals to watch for changes in the extension's source and automatically rebuild the extension.\n\n```bash\n# Watch the source directory in one terminal, automatically rebuilding when needed\njlpm watch\n# Run JupyterLab in another terminal\njupyter lab\n```\n\nWith the watch command running, every saved change will immediately be built locally and available in your running JupyterLab. Refresh JupyterLab to load the change in your browser (you may need to wait several seconds for the extension to be rebuilt).\n\nBy default, the `jlpm build` command generates the source maps for this extension to make it easier to debug using the browser dev tools. To also generate source maps for the JupyterLab core extensions, you can run the following command:\n\n```bash\njupyter lab build --minimize=False\n```\n\n### Development uninstall\n\n```bash\npip uninstall reprolab\n```\n\nIn development mode, you will also need to remove the symlink created by `jupyter labextension develop`\ncommand. To find its location, you can run `jupyter labextension list` to figure out where the `labextensions`\nfolder is located. Then you can remove the symlink named `reprolab` within that folder.\n\n### Packaging the extension\n\nSee [RELEASE](RELEASE.md)\n",
"bugtrack_url": null,
"license": "BSD 3-Clause License\n \n Copyright (c) 2025, Piotr Witek\n All rights reserved.\n \n Redistribution and use in source and binary forms, with or without\n modification, are permitted provided that the following conditions are met:\n \n 1. Redistributions of source code must retain the above copyright notice, this\n list of conditions and the following disclaimer.\n \n 2. Redistributions in binary form must reproduce the above copyright notice,\n this list of conditions and the following disclaimer in the documentation\n and/or other materials provided with the distribution.\n \n 3. Neither the name of the copyright holder nor the names of its\n contributors may be used to endorse or promote products derived from\n this software without specific prior written permission.\n \n THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\n IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE\n DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE\n FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL\n DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR\n SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER\n CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,\n OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.",
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