rust-graph

Name	rust-graph JSON
Version	0.1.0 JSON
	download
home_page	None
Summary	Simple and fast graph operations written in Rust
upload_time	2024-07-02 10:27:30
maintainer	None
docs_url	None
author	Kiyoon Kim
requires_python	>=3.8
license	Apache-2.0
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # rust-graph

[![image](https://img.shields.io/pypi/v/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)
[![PyPI - Downloads](https://img.shields.io/pypi/dm/rust-graph)](https://pypi.python.org/pypi/rust-graph)
[![image](https://img.shields.io/pypi/l/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)
[![image](https://img.shields.io/pypi/pyversions/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)
[![Actions status](https://github.com/deargen/rust-graph/workflows/Deploy%20a%20new%20version/badge.svg)](https://github.com/deargen/rust-graph/actions)

|  |  |
|--|--|
|[![Ruff](https://img.shields.io/badge/Ruff-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)](https://github.com/astral-sh/ruff) [![rustfmt](https://img.shields.io/badge/rustfmt-%23000000.svg?style=for-the-badge&logo=rust&logoColor=white)](https://github.com/rust-lang/rustfmt) |[![Actions status](https://github.com/deargen/rust-graph/workflows/Style%20checking/badge.svg)](https://github.com/deargen/rust-graph/actions)|
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Graph algorithms implemented in Rust, available as a Python package. >10x faster than `networkx`.

So far, there is only one function implemented: `all_pairs_dijkstra_path_length`. It's a re-write of the `networkx` function with the same name and should return the same results.

## 🛠️ Installation

```bash
pip install rust-graph
```

## 🚦 Usage

```python
from rust_graph import all_pairs_dijkstra_path_length

weighted_edges = [
    (0, 1, 1.0),
    (1, 2, 2.0),
    (2, 3, 3.0),
    (3, 0, 4.0),
    (0, 3, 5.0),
]

shortest_paths = all_pairs_dijkstra_path_length(weighted_edges, cutoff=3.0)
```

```python
>>> shortest_paths
{3: {3: 0.0, 2: 3.0}, 2: {2: 0.0, 1: 2.0, 0: 3.0, 3: 3.0}, 1: {0: 1.0, 2: 2.0, 1: 0.0}, 0: {1: 1.0, 0: 0.0, 2: 3.0}}
```

## 📈 Benchmark

Tried a couple of options but failed for various reasons. Here are some notes on them:

- [cugraph](https://developer.nvidia.com/blog/accelerating-networkx-on-nvidia-gpus-for-high-performance-graph-analytics/): 
    - Slower than `networkx` for the test data.
    - Not available on PyPI, only supports python 3.10 (and not above) and some dependencies were broken, making it difficult to set up.
- [rustworkx](https://www.rustworkx.org/): 
    - `cutoff` parameter is not implemented.
    - Extremely slow when the output is too large, because it returns lazy types rather than the actual values and converting it is probably not memory efficient.


Thus, we compare the performance of `networkx` and `rust-graph` for the `all_pairs_dijkstra_path_length` function.


### MacBook Pro (M1)

23x as fast as `networkx`:

```
networkx Dijkstra took 4.45 s
rust-graph Dijkstra took 0.19 s
```


### Personal laptop (AMD Ryzen R7 5800H (8 cores, 20MB total cache, 3.2 GHz, boost up to 4.4 GHz))

12x as fast as `networkx`:

```
networkx Dijkstra took 6.83 s
rust-graph Dijkstra took 0.57 s
```

If not using rayon parallelism, it's twice as slow:

```
networkx Dijkstra took 7.12 s
rust-graph Dijkstra took 1.04 s
```

### Azure server (AMD EPYC 7V13 64-Core Processor)

CPU info:

```
    Model name:            AMD EPYC 7V13 64-Core Processor
    CPU family:          25
    Model:               1
    Thread(s) per core:  1
    Core(s) per socket:  48
```

15x as fast as `networkx`:

```
networkx Dijkstra took 6.14 s
rust-graph Dijkstra took 0.41 s
```

## 👨‍💻️ Maintenance Notes

### Install from source

Install `uv`, `rustup` and `maturin`. Activate a virtual environment. Then,

```bash
bash scripts/install.sh
uv pip install -r deps/requirements_dev.in
python3 scripts/hf_download.py  # Download test data
```

### Run benchmarks

```bash
python3 tools/benchmark.py
```

### Compile requirements (generate lockfiles)

Use GitHub Actions: `apply-pip-compile.yml`. Manually launch the workflow and it will make a commit with the updated lockfiles.



            

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    "description": "# rust-graph\n\n[![image](https://img.shields.io/pypi/v/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)\n[![PyPI - Downloads](https://img.shields.io/pypi/dm/rust-graph)](https://pypi.python.org/pypi/rust-graph)\n[![image](https://img.shields.io/pypi/l/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)\n[![image](https://img.shields.io/pypi/pyversions/rust-graph.svg)](https://pypi.python.org/pypi/rust-graph)\n[![Actions status](https://github.com/deargen/rust-graph/workflows/Deploy%20a%20new%20version/badge.svg)](https://github.com/deargen/rust-graph/actions)\n\n|  |  |\n|--|--|\n|[![Ruff](https://img.shields.io/badge/Ruff-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)](https://github.com/astral-sh/ruff) [![rustfmt](https://img.shields.io/badge/rustfmt-%23000000.svg?style=for-the-badge&logo=rust&logoColor=white)](https://github.com/rust-lang/rustfmt) |[![Actions status](https://github.com/deargen/rust-graph/workflows/Style%20checking/badge.svg)](https://github.com/deargen/rust-graph/actions)|\n| [![Ruff](https://img.shields.io/badge/Ruff-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)](https://github.com/astral-sh/ruff) [![Clippy](https://img.shields.io/badge/clippy-%23000000.svg?style=for-the-badge&logo=rust&logoColor=white)](https://github.com/rust-lang/rust-clippy) | [![Actions status](https://github.com/deargen/rust-graph/workflows/Linting/badge.svg)](https://github.com/deargen/rust-graph/actions) |\n| [![pytest](https://img.shields.io/badge/pytest-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)](https://github.com/pytest-dev/pytest) [![cargo test](https://img.shields.io/badge/cargo%20test-%23000000.svg?style=for-the-badge&logo=rust&logoColor=white)](https://doc.rust-lang.org/cargo/commands/cargo-test.html) | [![Actions status](https://github.com/deargen/rust-graph/workflows/Tests/badge.svg)](https://github.com/deargen/rust-graph/actions) |\n| [![uv](https://img.shields.io/badge/uv-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)](https://github.com/astral-sh/uv) | [![Actions status](https://github.com/deargen/rust-graph/workflows/Check%20pip%20compile%20sync/badge.svg)](https://github.com/deargen/rust-graph/actions) |\n\n\nGraph algorithms implemented in Rust, available as a Python package. >10x faster than `networkx`.\n\nSo far, there is only one function implemented: `all_pairs_dijkstra_path_length`. It's a re-write of the `networkx` function with the same name and should return the same results.\n\n## \ud83d\udee0\ufe0f Installation\n\n```bash\npip install rust-graph\n```\n\n## \ud83d\udea6 Usage\n\n```python\nfrom rust_graph import all_pairs_dijkstra_path_length\n\nweighted_edges = [\n    (0, 1, 1.0),\n    (1, 2, 2.0),\n    (2, 3, 3.0),\n    (3, 0, 4.0),\n    (0, 3, 5.0),\n]\n\nshortest_paths = all_pairs_dijkstra_path_length(weighted_edges, cutoff=3.0)\n```\n\n```python\n>>> shortest_paths\n{3: {3: 0.0, 2: 3.0}, 2: {2: 0.0, 1: 2.0, 0: 3.0, 3: 3.0}, 1: {0: 1.0, 2: 2.0, 1: 0.0}, 0: {1: 1.0, 0: 0.0, 2: 3.0}}\n```\n\n## \ud83d\udcc8 Benchmark\n\nTried a couple of options but failed for various reasons. Here are some notes on them:\n\n- [cugraph](https://developer.nvidia.com/blog/accelerating-networkx-on-nvidia-gpus-for-high-performance-graph-analytics/): \n    - Slower than `networkx` for the test data.\n    - Not available on PyPI, only supports python 3.10 (and not above) and some dependencies were broken, making it difficult to set up.\n- [rustworkx](https://www.rustworkx.org/): \n    - `cutoff` parameter is not implemented.\n    - Extremely slow when the output is too large, because it returns lazy types rather than the actual values and converting it is probably not memory efficient.\n\n\nThus, we compare the performance of `networkx` and `rust-graph` for the `all_pairs_dijkstra_path_length` function.\n\n\n### MacBook Pro (M1)\n\n23x as fast as `networkx`:\n\n```\nnetworkx Dijkstra took 4.45 s\nrust-graph Dijkstra took 0.19 s\n```\n\n\n### Personal laptop (AMD Ryzen R7 5800H (8 cores, 20MB total cache, 3.2 GHz, boost up to 4.4 GHz))\n\n12x as fast as `networkx`:\n\n```\nnetworkx Dijkstra took 6.83 s\nrust-graph Dijkstra took 0.57 s\n```\n\nIf not using rayon parallelism, it's twice as slow:\n\n```\nnetworkx Dijkstra took 7.12 s\nrust-graph Dijkstra took 1.04 s\n```\n\n### Azure server (AMD EPYC 7V13 64-Core Processor)\n\nCPU info:\n\n```\n    Model name:            AMD EPYC 7V13 64-Core Processor\n    CPU family:          25\n    Model:               1\n    Thread(s) per core:  1\n    Core(s) per socket:  48\n```\n\n15x as fast as `networkx`:\n\n```\nnetworkx Dijkstra took 6.14 s\nrust-graph Dijkstra took 0.41 s\n```\n\n## \ud83d\udc68\u200d\ud83d\udcbb\ufe0f Maintenance Notes\n\n### Install from source\n\nInstall `uv`, `rustup` and `maturin`. 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