scipion-em


Namescipion-em JSON
Version 3.6.0 PyPI version JSON
download
home_pagehttps://github.com/scipion-em/scipion-em
SummaryThis modules contains classes related with EM
upload_time2024-03-15 12:54:49
maintainer
docs_urlNone
authorJ.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna
requires_python
license
keywords scipion cryoem imageprocessing scipion-3.0
VCS
bugtrack_url
requirements scipion-pyworkflow biopython tifffile emtable mrcfile matplotlib Pillow scipy
Travis-CI No Travis.
coveralls test coverage No coveralls.
            .. image:: https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg
  :width: 200
  :alt: Contributor Covenant
  :target: https://www.contributor-covenant.org/version/2/0/code_of_conduct/


pwem
====

**pwem** is a Python module of Scipion framework for image processing in Electron Microscopy

The entire collection is licensed under the terms of the GNU Public License,
version 3 (GPLv3).

Development
-----------

To install **pwem** for development purposes, one can do:

.. code-block:: bash

    # Create a clean virtual environment
    conda create -n scipion python=3.8
    conda activate
    git clone https://github.com/scipion-em/scipion-em.git
    cd scipion-em
    pip install -e .

Running tests
-------------

.. code-block:: bash

    conda activate scipion
    cd scipion-em
    export SCIPION_DOMAIN="pwem"
    python -m unittest discover

API documentation
-----------------

https://scipion-em.github.io/docs/release-3.0.0/api/pwem/pwem.html



            

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