=========================
Scipion plugin for fidder
=========================
.. image:: https://img.shields.io/pypi/v/scipion-em-fidder.svg
:target: https://pypi.python.org/pypi/scipion-em-fidder
:alt: PyPI release
.. image:: https://img.shields.io/pypi/l/scipion-em-fidder.svg
:target: https://pypi.python.org/pypi/scipion-em-fidder
:alt: License
.. image:: https://img.shields.io/pypi/pyversions/scipion-em-fidder.svg
:target: https://pypi.python.org/pypi/scipion-em-fidder
:alt: Supported Python versions
.. image:: https://img.shields.io/sonar/quality_gate/scipion-em_scipion-em-fidder?server=https%3A%2F%2Fsonarcloud.io
:target: https://sonarcloud.io/dashboard?id=scipion-em_scipion-em-fidder
:alt: SonarCloud quality gate
.. image:: https://img.shields.io/pypi/dm/scipion-em-fidder
:target: https://pypi.python.org/pypi/scipion-em-fidder
:alt: Downloads
This plugin provide a wrapper around the program `fidder <https://teamtomo.org/fidder/>`_ to use it within
`Scipion <https://scipion-em.github.io/docs/release-3.0.0/index.html>`_ framework.
Installation
------------
You will need to use `3.0 <https://scipion-em.github.io/docs/release-3.0.0/docs/scipion-modes/how-to-install.html>`_
version of Scipion to be able to run these protocols. To install the plugin, you have two options:
a) Stable version:
.. code-block::
scipion3 installp -p scipion-em-fidder
b) Developer's version
* download the repository from github:
.. code-block::
git clone -b devel https://github.com/scipion-em/scipion-em-fidder.git
* install:
.. code-block::
scipion3 installp -p /path/to/scipion-em-fidder --devel
To check the installation, simply run the following Scipion test for the plugin:
.. code-block::
scipion3 tests fidder.tests.tests_fidder.TestFidder
Licensing
---------
fidder software package is available under `BSD-3-Clause license <https://opensource.org/license/BSD-3-Clause>`_
Protocols
---------
* **Tilt-series: detect and erase fiducials.**
Latest plugin versions
----------------------
If you want to check the latest version and release history go to `CHANGES <https://github.com/scipion-em-fidder/fidder/blob/master/CHANGES.txt>`_
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