===================
SIDESPLITTER plugin
===================
This plugin provides a wrapper for `SIDESPLITTER <https://github.com/StructuralBiology-ICLMedicine/SIDESPLITTER>`_ program for mitigating local overfitting.
.. image:: https://img.shields.io/pypi/v/scipion-em-sidesplitter.svg
:target: https://pypi.python.org/pypi/scipion-em-sidesplitter
:alt: PyPI release
.. image:: https://img.shields.io/pypi/l/scipion-em-sidesplitter.svg
:target: https://pypi.python.org/pypi/scipion-em-sidesplitter
:alt: License
.. image:: https://img.shields.io/pypi/pyversions/scipion-em-sidesplitter.svg
:target: https://pypi.python.org/pypi/scipion-em-sidesplitter
:alt: Supported Python versions
.. image:: https://img.shields.io/sonar/quality_gate/scipion-em_scipion-em-sidesplitter?server=https%3A%2F%2Fsonarcloud.io
:target: https://sonarcloud.io/dashboard?id=scipion-em_scipion-em-sidesplitter
:alt: SonarCloud quality gate
.. image:: https://img.shields.io/pypi/dm/scipion-em-sidesplitter
:target: https://pypi.python.org/pypi/scipion-em-sidesplitter
:alt: Downloads
Installation
------------
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
a) Stable version
.. code-block::
scipion installp -p scipion-em-sidesplitter
b) Developer's version
* download repository
.. code-block::
git clone -b devel https://github.com/scipion-em/scipion-em-sidesplitter.git
* install
.. code-block::
scipion installp -p /path/to/scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
* Default installation path assumed is ``software/em/sidesplitter-1.2``, if you want to change it, set *SIDESPLITTER_HOME* in ``scipion.conf`` file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
.. code-block::
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitter
A complete list of tests can also be seen by executing ``scipion test --show --grep sidesplitter``
Supported versions
------------------
1.2
Protocols
---------
* local filter
References
----------
1. Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
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