===========
Warp plugin
===========
This plugin provides a wrapper for some of the programs of the `Warp <https://github.com/dtegunov/warp>`_ software.
.. image:: https://img.shields.io/pypi/v/scipion-em-warp.svg
:target: https://pypi.python.org/pypi/scipion-em-warp
:alt: PyPI release
.. image:: https://img.shields.io/pypi/l/scipion-em-warp.svg
:target: https://pypi.python.org/pypi/scipion-em-warp
:alt: License
.. image:: https://img.shields.io/pypi/pyversions/scipion-em-warp.svg
:target: https://pypi.python.org/pypi/scipion-em-warp
:alt: Supported Python versions
.. image:: https://img.shields.io/sonar/quality_gate/scipion-em_scipion-em-warp?server=https%3A%2F%2Fsonarcloud.io
:target: https://sonarcloud.io/dashboard?id=scipion-em_scipion-em-warp
:alt: SonarCloud quality gate
.. image:: https://img.shields.io/pypi/dm/scipion-em-warp
:target: https://pypi.python.org/pypi/scipion-em-warp
:alt: Downloads
Installation
-------------
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
a) Stable version
.. code-block::
scipion installp -p scipion-em-warp
b) Developer's version
* download repository
.. code-block::
git clone -b devel https://github.com/scipion-em/scipion-em-warp.git
* install
.. code-block::
scipion installp -p /path/to/scipion-em-warp --devel
Verifying
---------
To check the installation, simply run one of the following Scipion tests:
* scipion3 tests warp.tests.test_protocols.TestDeconvolveMics
* scipion3 tests warp.tests.test_protocols_tomo.TestDeconvolveTomo
Protocols
----------
* deconvolve micrographs
* deconvolve tomograms
* deconvolve tilt-series
References
-----------
1. Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.
Raw data
{
"_id": null,
"home_page": "https://github.com/scipion-em/scipion-em-warp",
"name": "scipion-em-warp",
"maintainer": null,
"docs_url": null,
"requires_python": null,
"maintainer_email": null,
"keywords": "scipion electron-microscopy cryo-em structural-biology image-processing scipion-3.0",
"author": "Grigory Sharov",
"author_email": "sharov.grigory@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/30/20/5ef2c21c67ce191a7d1d1afcaec8aa97fce9d4050500021434a9c0cbf49c/scipion-em-warp-3.2.3.tar.gz",
"platform": null,
"description": "===========\nWarp plugin\n===========\n\nThis plugin provides a wrapper for some of the programs of the `Warp <https://github.com/dtegunov/warp>`_ software.\n\n.. image:: https://img.shields.io/pypi/v/scipion-em-warp.svg\n :target: https://pypi.python.org/pypi/scipion-em-warp\n :alt: PyPI release\n\n.. image:: https://img.shields.io/pypi/l/scipion-em-warp.svg\n :target: https://pypi.python.org/pypi/scipion-em-warp\n :alt: License\n\n.. image:: https://img.shields.io/pypi/pyversions/scipion-em-warp.svg\n :target: https://pypi.python.org/pypi/scipion-em-warp\n :alt: Supported Python versions\n\n.. image:: https://img.shields.io/sonar/quality_gate/scipion-em_scipion-em-warp?server=https%3A%2F%2Fsonarcloud.io\n :target: https://sonarcloud.io/dashboard?id=scipion-em_scipion-em-warp\n :alt: SonarCloud quality gate\n\n.. image:: https://img.shields.io/pypi/dm/scipion-em-warp\n :target: https://pypi.python.org/pypi/scipion-em-warp\n :alt: Downloads\n\nInstallation\n-------------\n\nYou will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:\n\na) Stable version\n\n.. code-block::\n\n scipion installp -p scipion-em-warp\n\nb) Developer's version\n\n * download repository\n\n .. code-block::\n\n git clone -b devel https://github.com/scipion-em/scipion-em-warp.git\n\n * install\n\n .. code-block::\n\n scipion installp -p /path/to/scipion-em-warp --devel\n\n\nVerifying\n---------\n\nTo check the installation, simply run one of the following Scipion tests:\n\n* scipion3 tests warp.tests.test_protocols.TestDeconvolveMics\n* scipion3 tests warp.tests.test_protocols_tomo.TestDeconvolveTomo\n\nProtocols\n----------\n\n* deconvolve micrographs\n* deconvolve tomograms\n* deconvolve tilt-series\n\nReferences\n-----------\n\n1. Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.\n\n\n",
"bugtrack_url": null,
"license": null,
"summary": "Plugin to use Warp within the Scipion framework",
"version": "3.2.3",
"project_urls": {
"Bug Reports": "https://github.com/scipion-em/scipion-em-warp/issues",
"Homepage": "https://github.com/scipion-em/scipion-em-warp",
"Source": "https://github.com/scipion-em/scipion-em-warp/"
},
"split_keywords": [
"scipion",
"electron-microscopy",
"cryo-em",
"structural-biology",
"image-processing",
"scipion-3.0"
],
"urls": [
{
"comment_text": "scipion-3.0",
"digests": {
"blake2b_256": "716aaa408846d9a0a1fe2ef34fbe57c7898241c2b42cf8700618b3dab4b6fc94",
"md5": "e20f54c49607917f28b67b5117e1c60d",
"sha256": "7df6400868fedf0dd1ecf72249631f7521d1ed0d28f6d1af462c038689d20fd8"
},
"downloads": -1,
"filename": "scipion_em_warp-3.2.3-py3-none-any.whl",
"has_sig": false,
"md5_digest": "e20f54c49607917f28b67b5117e1c60d",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": null,
"size": 49990,
"upload_time": "2024-04-18T12:45:37",
"upload_time_iso_8601": "2024-04-18T12:45:37.728471Z",
"url": "https://files.pythonhosted.org/packages/71/6a/aa408846d9a0a1fe2ef34fbe57c7898241c2b42cf8700618b3dab4b6fc94/scipion_em_warp-3.2.3-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "scipion-3.0",
"digests": {
"blake2b_256": "30205ef2c21c67ce191a7d1d1afcaec8aa97fce9d4050500021434a9c0cbf49c",
"md5": "4a2a170382699bf380a24a2d91b58e20",
"sha256": "765bd33307c5a6a955791bd239598138df31d2cb5795452192997325209c882d"
},
"downloads": -1,
"filename": "scipion-em-warp-3.2.3.tar.gz",
"has_sig": false,
"md5_digest": "4a2a170382699bf380a24a2d91b58e20",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 42904,
"upload_time": "2024-04-18T12:45:39",
"upload_time_iso_8601": "2024-04-18T12:45:39.824062Z",
"url": "https://files.pythonhosted.org/packages/30/20/5ef2c21c67ce191a7d1d1afcaec8aa97fce9d4050500021434a9c0cbf49c/scipion-em-warp-3.2.3.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-04-18 12:45:39",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "scipion-em",
"github_project": "scipion-em-warp",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "scipion-em-warp"
}
JSON
