seqchromloader

Name	seqchromloader JSON
Version	0.8.0 JSON
	download
home_page	https://github.com/yztxwd/seqchromloader
Summary	Sequence and chromatin dataloader for deep learning
upload_time	2024-11-05 19:55:36
maintainer	None
docs_url	None
author	None
requires_python	None
license	None
keywords	dataloder pytorch webdataset
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # seqchromloader

seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.

Plan to support dataset formats including:
- webdataset (done)
- tfrecord (x)

Training framework support:
- pytorch dataloader (done)
- pytorch-lightning datamodule (done)
- NVIDIA-DALI (x)

## Installation

### conda (suggested):

`mamba install -c bioconda -c conda-forge seqchromloader`

or

`conda install -c bioconda -c conda-forge seqchromloader`

### pip

`pip install seqchromloader`

## Usage

For detailed usage, please refer to [documentation](https://seqchromloader.readthedocs.io/en/latest/)

            

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