snakemake-executor-plugin-slurm-gustave-roussy


Namesnakemake-executor-plugin-slurm-gustave-roussy JSON
Version 0.5.2 PyPI version JSON
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home_pagehttps://github.com/tdayris/snakemake-executor-plugin-slurm-gustave-roussy
SummaryNone
upload_time2024-11-08 15:54:28
maintainerNone
docs_urlNone
authortdayris
requires_python<4.0,>=3.11
licenseMIT
keywords snakemake plugin executor cluster slurm gustave-roussy
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # Snakemake executor plugin: slurm-gustave-roussy

Snakemake plugin executor designed to match [Gustave Roussy](https://www.gustaveroussy.fr/en) computing cluster specificities : automatic partition seleciton, and default resources value.

Checkout the profile given on the cluster to automatically activate this executor with your pipeline:

`snakemake --profile /mnt/beegfs/pipelines/unofficial-snakemake-wrappers/profiles/slurm-web ... `

For documentation, see the [Snakemake plugin catalog](https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/slurm-gustave-roussy.html).

            

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