| Name | snapgene-reader JSON |
| Version |
0.1.20
JSON |
| download |
| home_page | |
| Summary | Convert Snapgene *.dna files dict/json/biopython. |
| upload_time | 2022-05-04 17:32:47 |
| maintainer | EdinburghGenomeFoundry |
| docs_url | None |
| author | yishaluo |
| requires_python | |
| license | MIT |
| keywords |
dna
sequence
design
format
converter
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
SnapGene Reader
===============
.. image:: https://github.com/Edinburgh-Genome-Foundry/Flametree/actions/workflows/build.yml/badge.svg
:target: https://github.com/Edinburgh-Genome-Foundry/Flametree/actions/workflows/build.yml
:alt: Travis CI build status
.. image:: https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/SnapGeneReader/badge.svg?branch=master
:target: https://coveralls.io/github/Edinburgh-Genome-Foundry/SnapGeneReader?branch=master
SnapGene Reader is a Python library to parse Snapgene ``*.dna`` files into dictionaries or Biopython SeqRecords:
.. code:: python
from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord
file_path = './snap_gene_file.dna'
dictionary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)
Installation
------------
Install with PIP:
.. code:: bash
pip install snapgene_reader
Test with Pytest:
.. code:: bash
pytest --cov=snapgene_reader tests/
Licence = MIT
-------------
SnapGene Reader is an open-source software originally written by `Isaac Luo <https://github.com/IsaacLuo>`_ at the Cai Lab. This fork is released on `Github <https://github.com/Edinburgh-Genome-Foundry/SnapGeneReader>`_ under the MIT licence. Everyone is welcome to contribute!
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