| Name | spydcmtk JSON |
| Version |
1.2.12
JSON |
| download |
| home_page | None |
| Summary | Simple python dicom toolkit. |
| upload_time | 2025-08-25 15:53:44 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.9.0 |
| license | MIT |
| keywords |
ct
dicom
imaging
medical
mri
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# *spydcmtk*
*Simple PYthon DiCoM Tool Kit*
Dicom organisational, querying and conversion toolkit
*spydcmtk* is a pure Python package built on top of [*pydicom*](https://github.com/pydicom/pydicom).
This package extends pydicom with a class structure based upon the Patient-Study-Series-Image hierarchy. In addition, it provides a number of built in routines for common actions when working with dicom files, such as human readable renaming, anonymisation, searching and summarising.
## Installation
Using [pip](https://pypi.org/project/spydcmtk/):
```
pip install spydcmtk
```
## Quick start
If you installed via pip then *spydcmtk* console script will be exposed in your python environment.
Access via:
```bash
spydcmtk -h
```
to see the commandline usage available to you.
If you would like to incorporate spydcmtk into your python project, then import as:
```python
import spydcmtk
listOfStudies = spydcmtk.dcmTK.ListOfDicomStudies.setFromDirectory(MY_DICOM_DIRECTORY)
# Example filtering
dcmStudy = listOfStudies.getStudyByDate('20230429') # Dates in dicom standard string format: YYYYMMDD
dcmSeries = dcmStudy.getSeriesBySeriesNumber(1)
# Example writing new dicom files with anonymisation
dcmStudy.writeToOrganisedFileStructure(tmpDir, anonName='Not A Name')
```
# Configuration
spydcmtk uses a spydcmtk.conf file for configuration.
By default spydcmtk.conf files are search for in the following locations:
1. source_code_directory/spydcmtk.conf (file with default settings)
2. $HOME/spydcmtk.conf
3. $HOME/.spydcmtk.conf
4. $HOME/.config/spydcmtk.conf
5. Full file path defined at environment variable: "SPYDCMTK_CONF"
6. Full path passed as commandline argument to `spydcmtk`
Files are read in the above order with each subsequent variable present over writing any previously defined.
For information on files found and variables used run:
`spydcmtk -INFO`
## Documentation
Clear documentation of basic features can be seen by running the *"spycmtk -h"* command as referenced above.
For detailed documentation please see [spydcmtk-documentation](https://fraser29.github.io/spydcmtk/)
## Works in progress
Basic handling of DicomSegmentation images is added :
- [x] writing a label map to dicom segmentation
- [x] basic reading a dicom segmentation and writing to vti/vts
- [ ] handling multi label dicom segmentations
- [ ] improved, explicit handling of data orientation for
- [ ] multi-volume dicom images
- [ ] multi-label dicom seg images
Raw data
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