ssm-simulators


Namessm-simulators JSON
Version 0.10.2 PyPI version JSON
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SummarySSMS is a package collecting simulators and training data generators for cognitive science, neuroscience, and approximate bayesian computation
upload_time2025-07-11 15:29:45
maintainerNone
docs_urlNone
authorNone
requires_python<3.14,>=3.10
licenseMIT License Copyright (c) 2021 Alexander Fengler Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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            # SSMS (Sequential Sampling Model Simulators)
Python Package which collects simulators for Sequential Sampling Models.

Find the package documentation [here](https://lnccbrown.github.io/ssm-simulators/).

![PyPI](https://img.shields.io/pypi/v/ssm-simulators)
![PyPI_dl](https://img.shields.io/pypi/dm/ssm-simulators)
[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
[![codecov](https://codecov.io/gh/lnccbrown/ssm-simulators/branch/main/graph/badge.svg)](https://codecov.io/gh/lnccbrown/ssm-simulators)

### Quick Start

The `ssms` package serves two purposes.

1. Easy access to *fast simulators of sequential sampling models*
2. Support infrastructure to construct training data for various approaches to likelihood / posterior amortization

A number of tutorial notebooks are available under the `/notebooks` directory.

#### Installation

```sh
pip install ssm-simulators
```

> [!NOTE]
> Building from source or developing this package requires a C compiler (such as GCC).
> On Linux, you can install GCC with:
> ```bash
> sudo apt-get install build-essential
> ```
> Most users installing from PyPI wheels do **not** need to install GCC.

#### Command Line Interface
The package exposes a command-line tool, `generate`, for creating training data from a YAML configuration file.

```bash
generate --config-path <path/to/config.yaml> --output <output/directory> [--log-level INFO]
```

- `--config-path`: Path to your YAML configuration file (required).
- `--output`: Directory where generated data will be saved (required).
- `--n-files`: (Optional) Number of data files to generate. Default is `1` file.
- `--log-level`: (Optional) Set the logging level (`DEBUG`, `INFO`, `WARNING`, `ERROR`, `CRITICAL`). Default is `WARNING`.

Below is a sample YAML configuration you can use with the `generate` command:

```yaml
MODEL: 'ddm'
N_SAMPLES: 2000
N_PARAMETER_SETS: 100
DELTA_T: 0.001
N_TRAINING_SAMPLES_BY_PARAMETER_SET: 200
N_SUBRUNS: 20
GENERATOR_APPROACH: 'lan'
```

**Example:**

```bash
generate --config-path myconfig.yaml --output ./output --n-files 10 --log-level INFO
```

This will generate training data according to your configuration and save it in the specified output directory.

### Tutorial

Check the basic tutorial [here](docs/basic_tutorial/basic_tutorial.ipynb).

### Advanced: Dependency Management with uv

We use `uv` for fast and efficient dependency management. To get started:

1. Install `uv`:
```bash
curl -LsSf https://astral.sh/uv/install.sh | sh
```

2. Install dependencies (including development):
```bash
uv sync --all-groups  # Installs all dependency groups
```

            

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    "description": "# SSMS (Sequential Sampling Model Simulators)\nPython Package which collects simulators for Sequential Sampling Models.\n\nFind the package documentation [here](https://lnccbrown.github.io/ssm-simulators/).\n\n![PyPI](https://img.shields.io/pypi/v/ssm-simulators)\n![PyPI_dl](https://img.shields.io/pypi/dm/ssm-simulators)\n[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)\n[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)\n[![codecov](https://codecov.io/gh/lnccbrown/ssm-simulators/branch/main/graph/badge.svg)](https://codecov.io/gh/lnccbrown/ssm-simulators)\n\n### Quick Start\n\nThe `ssms` package serves two purposes.\n\n1. Easy access to *fast simulators of sequential sampling models*\n2. Support infrastructure to construct training data for various approaches to likelihood / posterior amortization\n\nA number of tutorial notebooks are available under the `/notebooks` directory.\n\n#### Installation\n\n```sh\npip install ssm-simulators\n```\n\n> [!NOTE]\n> Building from source or developing this package requires a C compiler (such as GCC).\n> On Linux, you can install GCC with:\n> ```bash\n> sudo apt-get install build-essential\n> ```\n> Most users installing from PyPI wheels do **not** need to install GCC.\n\n#### Command Line Interface\nThe package exposes a command-line tool, `generate`, for creating training data from a YAML configuration file.\n\n```bash\ngenerate --config-path <path/to/config.yaml> --output <output/directory> [--log-level INFO]\n```\n\n- `--config-path`: Path to your YAML configuration file (required).\n- `--output`: Directory where generated data will be saved (required).\n- `--n-files`: (Optional) Number of data files to generate. Default is `1` file.\n- `--log-level`: (Optional) Set the logging level (`DEBUG`, `INFO`, `WARNING`, `ERROR`, `CRITICAL`). Default is `WARNING`.\n\nBelow is a sample YAML configuration you can use with the `generate` command:\n\n```yaml\nMODEL: 'ddm'\nN_SAMPLES: 2000\nN_PARAMETER_SETS: 100\nDELTA_T: 0.001\nN_TRAINING_SAMPLES_BY_PARAMETER_SET: 200\nN_SUBRUNS: 20\nGENERATOR_APPROACH: 'lan'\n```\n\n**Example:**\n\n```bash\ngenerate --config-path myconfig.yaml --output ./output --n-files 10 --log-level INFO\n```\n\nThis will generate training data according to your configuration and save it in the specified output directory.\n\n### Tutorial\n\nCheck the basic tutorial [here](docs/basic_tutorial/basic_tutorial.ipynb).\n\n### Advanced: Dependency Management with uv\n\nWe use `uv` for fast and efficient dependency management. To get started:\n\n1. Install `uv`:\n```bash\ncurl -LsSf https://astral.sh/uv/install.sh | sh\n```\n\n2. Install dependencies (including development):\n```bash\nuv sync --all-groups  # Installs all dependency groups\n```\n",
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