| Name | substrafl JSON |
| Version |
0.45.0
JSON |
| download |
| home_page | None |
| Summary | A high-level federated learning Python library to run federated learning experiments at scale on a Substra network |
| upload_time | 2024-03-27 10:54:38 |
| maintainer | None |
| docs_url | None |
| author | Owkin, Inc. |
| requires_python | >=3.9 |
| license |
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
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where such license applies only to those patent claims licensable
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wherever such third-party notices normally appear. The contents
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Copyright 2018-2022 Owkin, Inc.
Licensed under the Apache License, Version 2.0 (the "License");
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| keywords |
substrafl
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
<div align="left">
<a href="https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA"><img src="https://img.shields.io/badge/chat-on%20slack-blue?logo=slack" /></a> <a href="https://docs.substra.org/"><img src="https://img.shields.io/badge/read-docs-purple?logo=mdbook" /></a>
<br /><br /></div>
<div align="center">
<picture>
<object-position: center>
<source media="(prefers-color-scheme: dark)" srcset="https://raw.githubusercontent.com/substra/substra/main/Substra-logo-white.svg">
<source media="(prefers-color-scheme: light)" srcset="https://raw.githubusercontent.com/substra/substra/main/Substra-logo-colour.svg">
<img alt="Substra" src="https://raw.githubusercontent.com/substra/substra/main/Substra-logo-colour.svg" width="500">
</picture>
</div>
<br>
<br>
Substra is an open source federated learning (FL) software. It enables the training and validation of machine learning models on distributed datasets. It provides a flexible Python interface and a web application to run federated learning training at scale. This specific repository is about SubstraFL the high-level federated learning Python library based on the low-level [Substra](https://github.com/Substra/substra) python library. SubstraFL is used to run complex federated learning experiments at scale.
Substra's main usage is in production environments. It has already been deployed and used by hospitals and biotech companies (see the [MELLODDY](https://www.melloddy.eu/) project for instance). Substra can also be used on a single machine to perform FL simulations and debug code.
Substra was originally developed by [Owkin](https://owkin.com/) and is now hosted by the [Linux Foundation for AI and Data](https://lfaidata.foundation/). Today Owkin is the main contributor to Substra.
Join the discussion on [Slack](https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA) and [subscribe here](https://lists.lfaidata.foundation/g/substra-announce/join) to our newsletter.
## How to install
```sh
pip install substrafl
```
## To start using Substra
Have a look at our [documentation](https://docs.substra.org/).
Try out our [MNIST example](https://docs.substra.org/en/stable/substrafl_doc/examples/index.html#example-to-get-started-using-the-pytorch-interface).
## Support
If you need support, please either raise an issue on Github or ask on [Slack](https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA).
## Contributing
Substra warmly welcomes any contribution. Feel free to fork the repo and create a pull request.
## How to test
Install `substrafl` in editable mode with developper dependencies.
In addition, install `substra` and `substra-tools` in editable mode.
It is recommended to install all the libraries in a Python virtual env.
```sh
git clone git@github.com:Substra/substrafl.git
pip install -e "substrafl[dev]"
git clone git@github.com:Substra/substra.git
pip install -e substra
git clone git@github.com:Substra/substra-tools.git
pip install -e substra-tools
```
Now you can use the following command from `subtrafl` top level directory to run tests:
```sh
cd substrafl
make test-subprocess
```
### Running advanced test suites
Substra can be used in three different modes: using Python subprocesses (`subprocess`),
using Docker (`docker`) and using Kubernetes (`remote`).
The command `make test-subprocess` runs the test suite in subprocess mode. It's lightweight and perfect to start.
To test with the Docker mode, you will need Docker installed and running on your machine.
If necessary, install it using [Docker Desktop](https://www.docker.com/products/docker-desktop/).
The following command runs the test suites in subprocess and Docker mode:
```sh
make test-local
``
Please be warned that some of these tests are slow and the whole test suite might require a couple hours to complete.
To try out a local deployment with Kubernetes, please follow the [installation instructions](https://docs.substra.org/en/stable/contributing/local-deployment.html) provided in the documentation.
The following command runs the remote tests:
```sh
make test-remote
```
## How to generate the changelog
The changelog is managed with [towncrier](https://towncrier.readthedocs.io/en/stable/index.html).
To add a new entry in the changelog, add a file in the `changes` folder. The file name should have the following structure:
`<unique_id>.<change_type>`.
The `unique_id` is a unique identifier, we currently use the PR number.
The `change_type` can be of the following types: `added`, `changed`, `removed`, `fixed`.
To generate the changelog (for example during a release), use the following command (you must have the dev dependencies installed):
```
towncrier build --version=<x.y.z>
```
You can use the `--draft` option to see what would be generated without actually writing to the changelog (and without removing the fragments).
# Appendix
## Building the documentation
The API documentation is generated from the SubstraFL repository thanks to the auto doc module.
It is automatically built by <https://github.com/Substra/substra-documentation> and integrated into the general documentation [here](https://docs.substra.org/).
You can build the API documentation locally to see the changes made by your PR.
### Requirements
You need to have substrafl.dev installed on your machine and some extra requirements. From the SubstraFL repo:
```sh
pip install -e '.[dev]'
cd docs
pip install -r requirements.txt
```
### Build
You can build the documentation to see if your changes are well taken into account.
From the ./docs folder :
```sh
make clean html
```
No warning should be thrown by this command.
Then open the `./docs/_build/index.html` file to see the results.
You can also generate the documentation live so each of your changes are taken into account on the fly:
```sh
make livehtml
```
NB: Sometimes `make livehtml` does not take changes into account so running the `make html` command in parallel might be needed.
Raw data
{
"_id": null,
"home_page": null,
"name": "substrafl",
"maintainer": null,
"docs_url": null,
"requires_python": ">=3.9",
"maintainer_email": null,
"keywords": "substrafl",
"author": "Owkin, Inc.",
"author_email": null,
"download_url": "https://files.pythonhosted.org/packages/0e/f7/b139b012d9a9a2ed5002821bb5f3948f8735834cfebe1c8e4bd3a2e29225/substrafl-0.45.0.tar.gz",
"platform": null,
"description": "<div align=\"left\">\n<a href=\"https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA\"><img src=\"https://img.shields.io/badge/chat-on%20slack-blue?logo=slack\" /></a> <a href=\"https://docs.substra.org/\"><img src=\"https://img.shields.io/badge/read-docs-purple?logo=mdbook\" /></a>\n<br /><br /></div>\n\n<div align=\"center\">\n<picture>\n <object-position: center>\n <source media=\"(prefers-color-scheme: dark)\" srcset=\"https://raw.githubusercontent.com/substra/substra/main/Substra-logo-white.svg\">\n <source media=\"(prefers-color-scheme: light)\" srcset=\"https://raw.githubusercontent.com/substra/substra/main/Substra-logo-colour.svg\">\n <img alt=\"Substra\" src=\"https://raw.githubusercontent.com/substra/substra/main/Substra-logo-colour.svg\" width=\"500\">\n</picture>\n</div>\n<br>\n<br>\n\nSubstra is an open source federated learning (FL) software. It enables the training and validation of machine learning models on distributed datasets. It provides a flexible Python interface and a web application to run federated learning training at scale. This specific repository is about SubstraFL the high-level federated learning Python library based on the low-level [Substra](https://github.com/Substra/substra) python library. SubstraFL is used to run complex federated learning experiments at scale.\n\nSubstra's main usage is in production environments. It has already been deployed and used by hospitals and biotech companies (see the [MELLODDY](https://www.melloddy.eu/) project for instance). Substra can also be used on a single machine to perform FL simulations and debug code.\n\nSubstra was originally developed by [Owkin](https://owkin.com/) and is now hosted by the [Linux Foundation for AI and Data](https://lfaidata.foundation/). Today Owkin is the main contributor to Substra.\n\nJoin the discussion on [Slack](https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA) and [subscribe here](https://lists.lfaidata.foundation/g/substra-announce/join) to our newsletter.\n\n## How to install\n\n```sh\npip install substrafl\n```\n\n## To start using Substra\n\nHave a look at our [documentation](https://docs.substra.org/).\n\nTry out our [MNIST example](https://docs.substra.org/en/stable/substrafl_doc/examples/index.html#example-to-get-started-using-the-pytorch-interface).\n\n## Support\n\nIf you need support, please either raise an issue on Github or ask on [Slack](https://join.slack.com/t/substra-workspace/shared_invite/zt-1fqnk0nw6-xoPwuLJ8dAPXThfyldX8yA).\n\n\n\n## Contributing\n\nSubstra warmly welcomes any contribution. Feel free to fork the repo and create a pull request.\n\n## How to test\n\nInstall `substrafl` in editable mode with developper dependencies.\nIn addition, install `substra` and `substra-tools` in editable mode.\nIt is recommended to install all the libraries in a Python virtual env.\n\n```sh\ngit clone git@github.com:Substra/substrafl.git\npip install -e \"substrafl[dev]\"\ngit clone git@github.com:Substra/substra.git\npip install -e substra\ngit clone git@github.com:Substra/substra-tools.git\npip install -e substra-tools\n```\n\nNow you can use the following command from `subtrafl` top level directory to run tests:\n\n```sh\ncd substrafl\nmake test-subprocess\n```\n\n### Running advanced test suites\n\nSubstra can be used in three different modes: using Python subprocesses (`subprocess`),\n using Docker (`docker`) and using Kubernetes (`remote`).\n\nThe command `make test-subprocess` runs the test suite in subprocess mode. It's lightweight and perfect to start.\n\nTo test with the Docker mode, you will need Docker installed and running on your machine.\nIf necessary, install it using [Docker Desktop](https://www.docker.com/products/docker-desktop/).\n\nThe following command runs the test suites in subprocess and Docker mode:\n\n```sh\nmake test-local\n``\n\nPlease be warned that some of these tests are slow and the whole test suite might require a couple hours to complete.\n\nTo try out a local deployment with Kubernetes, please follow the [installation instructions](https://docs.substra.org/en/stable/contributing/local-deployment.html) provided in the documentation.\nThe following command runs the remote tests:\n\n```sh\nmake test-remote\n```\n\n## How to generate the changelog\n\nThe changelog is managed with [towncrier](https://towncrier.readthedocs.io/en/stable/index.html).\nTo add a new entry in the changelog, add a file in the `changes` folder. The file name should have the following structure:\n`<unique_id>.<change_type>`.\nThe `unique_id` is a unique identifier, we currently use the PR number.\nThe `change_type` can be of the following types: `added`, `changed`, `removed`, `fixed`.\n\nTo generate the changelog (for example during a release), use the following command (you must have the dev dependencies installed):\n\n```\ntowncrier build --version=<x.y.z>\n```\n\nYou can use the `--draft` option to see what would be generated without actually writing to the changelog (and without removing the fragments).\n\n\n# Appendix\n\n## Building the documentation\n\nThe API documentation is generated from the SubstraFL repository thanks to the auto doc module.\nIt is automatically built by <https://github.com/Substra/substra-documentation> and integrated into the general documentation [here](https://docs.substra.org/).\n\nYou can build the API documentation locally to see the changes made by your PR.\n\n### Requirements\n\nYou need to have substrafl.dev installed on your machine and some extra requirements. From the SubstraFL repo:\n\n```sh\npip install -e '.[dev]'\ncd docs\npip install -r requirements.txt\n```\n\n### Build\n\nYou can build the documentation to see if your changes are well taken into account.\nFrom the ./docs folder :\n\n```sh\nmake clean html\n```\n\nNo warning should be thrown by this command.\n\nThen open the `./docs/_build/index.html` file to see the results.\n\nYou can also generate the documentation live so each of your changes are taken into account on the fly:\n\n```sh\nmake livehtml\n```\n\nNB: Sometimes `make livehtml` does not take changes into account so running the `make html` command in parallel might be needed.\n",
"bugtrack_url": null,
"license": "\n Apache License\n Version 2.0, January 2004\n http://www.apache.org/licenses/\n \n TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION\n \n 1. Definitions.\n \n \"License\" shall mean the terms and conditions for use, reproduction,\n and distribution as defined by Sections 1 through 9 of this document.\n \n \"Licensor\" shall mean the copyright owner or entity authorized by\n the copyright owner that is granting the License.\n \n \"Legal Entity\" shall mean the union of the acting entity and all\n other entities that control, are controlled by, or are under common\n control with that entity. For the purposes of this definition,\n \"control\" means (i) the power, direct or indirect, to cause the\n direction or management of such entity, whether by contract or\n otherwise, or (ii) ownership of fifty percent (50%) or more of the\n outstanding shares, or (iii) beneficial ownership of such entity.\n \n \"You\" (or \"Your\") shall mean an individual or Legal Entity\n exercising permissions granted by this License.\n \n \"Source\" form shall mean the preferred form for making modifications,\n including but not limited to software source code, documentation\n source, and configuration files.\n \n \"Object\" form shall mean any form resulting from mechanical\n transformation or translation of a Source form, including but\n not limited to compiled object code, generated documentation,\n and conversions to other media types.\n \n \"Work\" shall mean the work of authorship, whether in Source or\n Object form, made available under the License, as indicated by a\n copyright notice that is included in or attached to the work\n (an example is provided in the Appendix below).\n \n \"Derivative Works\" shall mean any work, whether in Source or Object\n form, that is based on (or derived from) the Work and for which the\n editorial revisions, annotations, elaborations, or other modifications\n represent, as a whole, an original work of authorship. For the purposes\n of this License, Derivative Works shall not include works that remain\n separable from, or merely link (or bind by name) to the interfaces of,\n the Work and Derivative Works thereof.\n \n \"Contribution\" shall mean any work of authorship, including\n the original version of the Work and any modifications or additions\n to that Work or Derivative Works thereof, that is intentionally\n submitted to Licensor for inclusion in the Work by the copyright owner\n or by an individual or Legal Entity authorized to submit on behalf of\n the copyright owner. For the purposes of this definition, \"submitted\"\n means any form of electronic, verbal, or written communication sent\n to the Licensor or its representatives, including but not limited to\n communication on electronic mailing lists, source code control systems,\n and issue tracking systems that are managed by, or on behalf of, the\n Licensor for the purpose of discussing and improving the Work, but\n excluding communication that is conspicuously marked or otherwise\n designated in writing by the copyright owner as \"Not a Contribution.\"\n \n \"Contributor\" shall mean Licensor and any individual or Legal Entity\n on behalf of whom a Contribution has been received by Licensor and\n subsequently incorporated within the Work.\n \n 2. Grant of Copyright License. Subject to the terms and conditions of\n this License, each Contributor hereby grants to You a perpetual,\n worldwide, non-exclusive, no-charge, royalty-free, irrevocable\n copyright license to reproduce, prepare Derivative Works of,\n publicly display, publicly perform, sublicense, and distribute the\n Work and such Derivative Works in Source or Object form.\n \n 3. Grant of Patent License. Subject to the terms and conditions of\n this License, each Contributor hereby grants to You a perpetual,\n worldwide, non-exclusive, no-charge, royalty-free, irrevocable\n (except as stated in this section) patent license to make, have made,\n use, offer to sell, sell, import, and otherwise transfer the Work,\n where such license applies only to those patent claims licensable\n by such Contributor that are necessarily infringed by their\n Contribution(s) alone or by combination of their Contribution(s)\n with the Work to which such Contribution(s) was submitted. If You\n institute patent litigation against any entity (including a\n cross-claim or counterclaim in a lawsuit) alleging that the Work\n or a Contribution incorporated within the Work constitutes direct\n or contributory patent infringement, then any patent licenses\n granted to You under this License for that Work shall terminate\n as of the date such litigation is filed.\n \n 4. Redistribution. You may reproduce and distribute copies of the\n Work or Derivative Works thereof in any medium, with or without\n modifications, and in Source or Object form, provided that You\n meet the following conditions:\n \n (a) You must give any other recipients of the Work or\n Derivative Works a copy of this License; and\n \n (b) You must cause any modified files to carry prominent notices\n stating that You changed the files; and\n \n (c) You must retain, in the Source form of any Derivative Works\n that You distribute, all copyright, patent, trademark, and\n attribution notices from the Source form of the Work,\n excluding those notices that do not pertain to any part of\n the Derivative Works; and\n \n (d) If the Work includes a \"NOTICE\" text file as part of its\n distribution, then any Derivative Works that You distribute must\n include a readable copy of the attribution notices contained\n within such NOTICE file, excluding those notices that do not\n pertain to any part of the Derivative Works, in at least one\n of the following places: within a NOTICE text file distributed\n as part of the Derivative Works; within the Source form or\n documentation, if provided along with the Derivative Works; or,\n within a display generated by the Derivative Works, if and\n wherever such third-party notices normally appear. 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