tomwer
======
tomwer is offering tools to automate acquisition and reconstruction processes for Tomography.
It contains:
- a library to access each acquisition process individually
- gui and applications to control main processes (reconstruction, data transfert...) and execute them as a stand alone application.
- an orange add-on to help users defining their own workflow (http://orange.biolab.si)
.. image:: http://www.edna-site.org/pub/doc/tomwer/extra/tomwer_start_short.gif
.. |Gitlab Status| image:: https://gitlab.esrf.fr/tomotools/tomwer/badges/master/pipeline.svg
:target: https://gitlab.esrf.fr/tomotools/tomwer/pipelines
Documentation
-------------
`Latest documentation <https://tomotools.gitlab-pages.esrf.fr/tomwer/>`_
Installation
------------
Step 1 - tomwer
'''''''''''''''
To install it with all 'features':
.. code-block:: bash
pip install tomwer[full]
alternatively you can install the master branch from
.. code-block:: bash
pip install git+https://gitlab.esrf.fr/tomotools/tomwer/#egg=tomwer[full]
Step 2 - update orange-canvas-core and orange-widget-base (Optional)
''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
To access 'processing' wheels and 'reprocess action' you might want to install forks of update orange-canvas-core and orange-widget-base. This is optional and projects works with native orange projects
.. code-block:: bash
pip install git+https://github.com/payno/orange-canvas-core --no-deps --upgrade
pip install git+https://github.com/payno/orange-widget-base --no-deps --upgrade
Launching applications
::::::::::::::::::::::
After the installation tomwer is embedding several applications.
Those applications can be launched by calling:
.. code-block:: bash
tomwer appName {options}
.. note:: if you only call `tomwer` then the man page will be displayed.
.. note:: You can access each application help using ``
.. code-block:: bash
tomwer appName --help
tomwer canvas - orange canvas
'''''''''''''''''''''''''''''
You can launch the canvas to create workflows from the different 'bricks'
.. code-block:: bash
tomwer canvas
.. note:: you can also use `orange-canvas`
.. note:: if your installed a virtual environment do not forget to active it :
.. code-block:: bash
source myvirtualenv/bin/activate
Documentation
:::::::::::::
.. code-block:: bash
sphinx-build doc build/html
The documentation is build in doc/build/html and the entry point is index.html
.. code-block:: bash
firefox build/html/index.html
.. note:: the build of the documentation need sphinx to be installed. This is not an hard dependacy. So you might need to install it.
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