uniprotpy

Name	uniprotpy JSON
Version	0.0.1 JSON
	download
home_page	https://github.com/danielmarrama/uniprotpy
Summary	A Python library that interfaces with UniProt data.
upload_time	2023-03-23 19:15:45
maintainer
docs_url	None
author	Daniel Marrama
requires_python
license
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # UniProtPy

Python library that interfaces with UniProt API.

For something like [openvax/pyensembl](https://github.com/openvax/pyensembl) with UniProt.

The REST API has changed as of 2022. Many of the ways to extract data from UniProt is now different and there isn't a clean way to interface with it.


### Goals
1. Allow users to pull any kind of data from UniProt.
2. Store and query large data using a local database.
3. Manipulate and output data in many standard formats.

### Installation

```bash
pip install uniprotpy
```

### Getting a proteome for a species
```bash
uniprotpy get-best-proteome --taxon-id 9606
```

### TODO

- Retrieve individual entries in all supported formats.
- Get metadata (protein ID, name, gene, # of isoforms, etc.) for entries.
- Retrieve proteomes via proteome ID or select "best" proteome based on taxon ID.
- Query proteomes for a protein by ID, name, seq, or peptide unit.

            

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