| Name | utils2p JSON |
| Version |
1.0.1
JSON |
| download |
| home_page | https://github.com/NeLy-EPFL/utils2p |
| Summary | Basic utility functions for 2 photon image data generated using ThorImage and ThorSync. |
| upload_time | 2024-04-10 09:36:45 |
| maintainer | None |
| docs_url | None |
| author | Florian Aymanns |
| requires_python | None |
| license | None |
| keywords |
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
|
| coveralls test coverage |
No coveralls.
|
utils2p
=======
.. image:: https://travis-ci.com/NeLy-EPFL/utils2p.svg?token=snip9q1Tczja5zRZ7RGJ&branch=master
.. image:: https://codecov.io/gh/NeLy-EPFL/utils2p/branch/master/graph/badge.svg?token=Y5TJHHYYFT
:target: https://codecov.io/gh/NeLy-EPFL/utils2p
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.5501119.svg
:target: https://doi.org/10.5281/zenodo.5501119
.. contents Topics
Overview
--------
This module provides utility functions necessary for loading and processing
2-photon imaging data acquired with ThorLabs microscopes. It includes function
to read files generated by ThorImage and ThorSync.
Documentation
-------------
The full documentation is hosted on `github pages <https://nely-epfl.github.io/utils2p/>`_.
Installation
------------
Note that you will need an installation of `numpy <https://numpy.org/>`_ to install this package.
You can install numpy with the following command:
.. code-block:: shell
pip install numpy
The package can be installed using `pip <https://pypi.org/project/pip/>`_ with:
.. code-block:: shell
pip install utils2p
If you need the latest version or you want to make changes to the code, you should install
utils2p from source by following the steps below.
To do so first create a copy of the source code on your machine by cloning the repository:
.. code-block:: shell
git clone https://github.com/NeLy-EPFL/utils2p.git
Then install it using the following command:
.. code-block:: shell
pip install -e utils2p
Dependencies
------------
- python >3.6
- `pip <https://pypi.org/project/pip/>`_
- `numpy <https://numpy.org/>`_
- `h5py <https://www.h5py.org/>`_
- `scipy <https://scipy.org/>`_
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