| Name | vbz-h5py-plugin JSON |
| Version |
1.0.1
JSON |
| download |
| home_page | |
| Summary | Oxford Nanopore Technologies VBZ HDF plugin for h5py |
| upload_time | 2022-11-10 11:53:22 |
| maintainer | |
| docs_url | None |
| author | |
| requires_python | >=3.7 |
| license | |
| keywords |
nanopore
h5py
vbz
pod5
fast5
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
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# VBZ-H5Py-Plugin
This module provides a plugin to H5Py for the VBZ (de)compression library.
## VBZ Compression
VBZ compression is a compression algorithm developed by Oxford Nanopore to reduce
file size and improve read/write performance when handling raw data in POD5/Fast5 files.
Previously, the default compression was GZIP and comparing to GZIP we see a
compression improvement of >30% and a CPU performance improvement of >10X for
compression and >5X for decompression. Further details of the implementation and
benchmarks can be found here: [Nanoporetech/vbz_compression](https://github.com/nanoporetech/vbz_compression)
# Usage
Simply import the module to register the vbz plugin with `h5py`.
``` python
import vbz_h5py_plugin
```
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