<p align="center">
<img
src="https://raw.githubusercontent.com/moltools/versalign/main/logo.png"
height="150"
alt="Versalign logo"
/>
</p>
<p align="center">
<a href="https://github.com/moltools/versalign/actions/workflows/tests.yml">
<img alt="testing & quality" src="https://github.com/moltools/versalign/actions/workflows/tests.yml/badge.svg" /></a>
<a href="https://pypi.org/project/versalign">
<img alt="PyPI" src="https://img.shields.io/pypi/v/versalign" /></a>
<a href="https://pypi.org/project/versalign">
<img alt="PyPI - Python Version" src="https://img.shields.io/pypi/pyversions/versalign" /></a>
<!-- <a href="https://doi.org/10.5281/zenodo.11216453">
<img src="https://zenodo.org/badge/DOI/10.5281/zenodo.11216453.svg" alt="DOI" /></a> -->
</p>
Versalign is a naive alignment tool for lists of arbitrary objects. Versalign is able to perform pairwise sequence alignments and star-based multiple sequence alignments, based on custom scoring functions. Versalign is primarily designed to align short-ish sequences.
Versalign is a Python library and has no command line interface.
Pairwise alignments, which is the core of this library, is built around Biopython's `PairwiseAligner` class.
## Installation
The most recent code and data can be installed directly from GitHub with:
```shell
pip install git+https://github.com/moltools/versalign.git
```
The latest stable release can be installed from PyPI with:
```shell
pip install versalign
```
Versalign has been developed for Linux and MacOS.
## Getting started
See the [examples](https://github.com/moltools/versalign/tree/main/examples) folder for some basic usage examples.
Raw data
{
"_id": null,
"home_page": null,
"name": "versalign",
"maintainer": null,
"docs_url": null,
"requires_python": ">=3.10",
"maintainer_email": null,
"keywords": "alignment, arbitrary-objects, msa, pairwise",
"author": null,
"author_email": "David Meijer <david.meijer@wur.nl>",
"download_url": "https://files.pythonhosted.org/packages/bb/51/e7d933205bfec48f405404f72627ecbea27c9e6fa98b34f1d80c452c0cbf/versalign-2.0.5.tar.gz",
"platform": null,
"description": "<p align=\"center\">\n <img\n src=\"https://raw.githubusercontent.com/moltools/versalign/main/logo.png\"\n height=\"150\"\n alt=\"Versalign logo\"\n /> \n</p>\n\n<p align=\"center\">\n <a href=\"https://github.com/moltools/versalign/actions/workflows/tests.yml\">\n <img alt=\"testing & quality\" src=\"https://github.com/moltools/versalign/actions/workflows/tests.yml/badge.svg\" /></a>\n <a href=\"https://pypi.org/project/versalign\">\n <img alt=\"PyPI\" src=\"https://img.shields.io/pypi/v/versalign\" /></a>\n <a href=\"https://pypi.org/project/versalign\">\n <img alt=\"PyPI - Python Version\" src=\"https://img.shields.io/pypi/pyversions/versalign\" /></a>\n <!-- <a href=\"https://doi.org/10.5281/zenodo.11216453\">\n <img src=\"https://zenodo.org/badge/DOI/10.5281/zenodo.11216453.svg\" alt=\"DOI\" /></a> -->\n</p>\n\nVersalign is a naive alignment tool for lists of arbitrary objects. Versalign is able to perform pairwise sequence alignments and star-based multiple sequence alignments, based on custom scoring functions. Versalign is primarily designed to align short-ish sequences.\n\nVersalign is a Python library and has no command line interface.\n\nPairwise alignments, which is the core of this library, is built around Biopython's `PairwiseAligner` class.\n\n## Installation\n\nThe most recent code and data can be installed directly from GitHub with:\n\n```shell\npip install git+https://github.com/moltools/versalign.git\n```\n\nThe latest stable release can be installed from PyPI with:\n\n```shell\npip install versalign\n```\n\nVersalign has been developed for Linux and MacOS.\n\n## Getting started\n\nSee the [examples](https://github.com/moltools/versalign/tree/main/examples) folder for some basic usage examples.\n",
"bugtrack_url": null,
"license": null,
"summary": "Naive alignment for lists of arbitrary objects",
"version": "2.0.5",
"project_urls": {
"Documentation": "https://github.com/moltools/versalign#readme",
"Homepage": "https://github.com/moltools/versalign",
"Issues": "https://github.com/moltools/versalign/issues",
"Repository": "https://github.com/moltools/versalign"
},
"split_keywords": [
"alignment",
" arbitrary-objects",
" msa",
" pairwise"
],
"urls": [
{
"comment_text": null,
"digests": {
"blake2b_256": "16d46aa150b6d04de522e5d929f792d6d4c165c640f9f357a5c09a3c00722674",
"md5": "84cff2e1dec45e4089f5ecacd76468fc",
"sha256": "8720a823d2d12d276f9742adf953ec68abc717cc18df1d05df1e792be9ef0e37"
},
"downloads": -1,
"filename": "versalign-2.0.5-py3-none-any.whl",
"has_sig": false,
"md5_digest": "84cff2e1dec45e4089f5ecacd76468fc",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.10",
"size": 11359,
"upload_time": "2025-10-21T22:39:17",
"upload_time_iso_8601": "2025-10-21T22:39:17.025894Z",
"url": "https://files.pythonhosted.org/packages/16/d4/6aa150b6d04de522e5d929f792d6d4c165c640f9f357a5c09a3c00722674/versalign-2.0.5-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": null,
"digests": {
"blake2b_256": "bb51e7d933205bfec48f405404f72627ecbea27c9e6fa98b34f1d80c452c0cbf",
"md5": "bc11974a32843370c1ec2b8a24453aa8",
"sha256": "885df24ee198b1fb04cf991ee6925781fd78a9521447bfd1fa21f689c49426f0"
},
"downloads": -1,
"filename": "versalign-2.0.5.tar.gz",
"has_sig": false,
"md5_digest": "bc11974a32843370c1ec2b8a24453aa8",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.10",
"size": 41290,
"upload_time": "2025-10-21T22:39:18",
"upload_time_iso_8601": "2025-10-21T22:39:18.233785Z",
"url": "https://files.pythonhosted.org/packages/bb/51/e7d933205bfec48f405404f72627ecbea27c9e6fa98b34f1d80c452c0cbf/versalign-2.0.5.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2025-10-21 22:39:18",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "moltools",
"github_project": "versalign#readme",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "versalign"
}
JSON
