# vienna
[](http://badge.fury.io/py/vienna)
[](https://travis-ci.org/jyesselm/vienna)
[](https://github.com/PyCQA/pylint)
[](https://github.com/psf/black)
a short python wrapper for vienna
tools (https://www.tbi.univie.ac.at/RNA/ViennaRNA/doc/html/install.html) Note I did not develop this
software just built this short wrapper.
## how to install
### install anaconda
highly recommended to install anaconda first and create a py3 environment
```shell
# to install conda on linux
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh
conda create --name py3 python=3.7 --yes
conda activate py3
# to install conda on mac
# https://docs.anaconda.com/anaconda/install/mac-os/
bash ~/Downloads/Anaconda3-2020.02-MacOSX-x86_64.sh
```
### install vienna
Note this is just a wrapper so you must install the vienna fold code
```shell
# this can be accomplished using conda
conda install -c bioconda viennarna
# if you do not wish to use conda
# you can install it via many options from the website
https://www.tbi.univie.ac.at/RNA/
```
### install vienna python package
```shell
# vienna python package is avialible on PYPI
pip install vienna
# you can also install it from github
git clone https://github.com/jyesselm/vienna
cd vienna
python setup.py install
```
## how to use
```shell
>>> import vienna
>>> fr = vienna.fold('GGGGAAAACCCC')
>>> print(fr)
FoldResults(dot_bracket='((((....))))', mfe=-5.4, ens_defect=1.62)
```
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