voxio

Name	voxio JSON
Version	0.1.2 JSON
	download
home_page	https://github.com/caniko/voxio
Summary	Library for ingesting and processing voxel (3D imaging) data
upload_time	2023-03-25 07:27:40
maintainer
docs_url	None
author	caniko
requires_python	>=3.9,<3.11
license	BSD-4
keywords	3d voxel processing fix mesh
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Voxio: I/O package for 3D images

## Usage
- Read images in parallel with `simple_read_images(image_paths)`; convenience function with finder `simple_find_read_images(image_directory, image_format)`
- Read volumes that would require more than system memory in chunks, use reader to perform compute/analysis `chunk_read_stack_images(image_paths,  image_reader)`
- Remove artifacts from volume with single object `clear_everything_but_largest_object(image_paths, output_directory)`
- Alternative to [`scipy.ndimage.label`](https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.label.html) for situations with insufficient memory `label_binary_image(image_paths, output_directory)`
- Interpolate along the first dimension (z-axis) `morphological_interpolation_max_resolution_spacing(labeled_stack, ceiled_inter_stack_voxel_distance)`

## Installation
```shell
pip install voxio
```
            

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