| Name | wdbio JSON |
| Version |
0.0.2
JSON |
| download |
| home_page | https://github.com/jvfe/wdbio |
| Summary | Wikidata-related functions for bioinformatics |
| upload_time | 2023-01-28 13:37:54 |
| maintainer | jvfe |
| docs_url | None |
| author | jvfe |
| requires_python | >=3.8 |
| license | MIT |
| keywords |
cookiecutter
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
<!--
<p align="center">
<img src="https://github.com/jvfe/wdbio/raw/main/docs/source/logo.png" height="150">
</p>
-->
<h1 align="center">
WDBio
</h1>
<p align="center">
<a href="https://github.com/jvfe/wdbio/actions?query=workflow%3ATests">
<img alt="Tests" src="https://github.com/jvfe/wdbio/workflows/Tests/badge.svg" />
</a>
<a href="https://pypi.org/project/wdbio">
<img alt="PyPI" src="https://img.shields.io/pypi/v/wdbio" />
</a>
<a href="https://pypi.org/project/wdbio">
<img alt="PyPI - Python Version" src="https://img.shields.io/pypi/pyversions/wdbio" />
</a>
<a href="https://github.com/jvfe/wdbio/blob/main/LICENSE">
<img alt="PyPI - License" src="https://img.shields.io/pypi/l/wdbio" />
</a>
<a href='https://wdbio.readthedocs.io/en/latest/?badge=latest'>
<img src='https://readthedocs.org/projects/wdbio/badge/?version=latest' alt='Documentation Status' />
</a>
<a href="https://github.com/jvfe/cookiecutter-python-package">
<img alt="Cookiecutter template from @jvfe based on @cthoyt" src="https://img.shields.io/badge/Cookiecutter-snekpack-blue" />
</a>
<a href='https://github.com/psf/black'>
<img src='https://img.shields.io/badge/code%20style-black-000000.svg' alt='Code style: black' />
</a>
<a href="https://github.com/jvfe/wdbio/blob/main/.github/CODE_OF_CONDUCT.md">
<img src="https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg" alt="Contributor Covenant"/>
</a>
</p>
Wikidata-related functions for bioinformatics
## 💪 Getting Started
> TODO show in a very small amount of space the **MOST** useful thing your package can do.
> Make it as short as possible! You have an entire set of docs for later.
## 🚀 Installation
<!-- Uncomment this section after your first ``tox -e finish``
The most recent release can be installed from
[PyPI](https://pypi.org/project/wdbio/) with:
```bash
$ pip install wdbio
```
-->
The most recent code and data can be installed directly from GitHub with:
```bash
$ pip install git+https://github.com/jvfe/wdbio.git
```
## 👐 Contributing
Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See
[CONTRIBUTING.md](https://github.com/jvfe/wdbio/blob/master/.github/CONTRIBUTING.md) for more information on getting involved.
## 👋 Attribution
### ⚖️ License
The code in this package is licensed under the MIT license.
<!--
### 📖 Citation
Citation goes here!
-->
<!--
### 🎁 Support
This project has been supported by the following organizations (in alphabetical order):
- [Harvard Program in Therapeutic Science - Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/)
-->
<!--
### 💰 Funding
This project has been supported by the following grants:
| Funding Body | Program | Grant |
|----------------------------------------------------------|-------------------------------------------------------------------------------------------------------------------------------|-----------------|
| DARPA | [Automating Scientific Knowledge Extraction (ASKE)](https://www.darpa.mil/program/automating-scientific-knowledge-extraction) | HR00111990009 |
-->
### 🍪 Cookiecutter
This package was created with [@audreyfeldroy](https://github.com/audreyfeldroy)'s
[cookiecutter](https://github.com/cookiecutter/cookiecutter) package using [@jvfe](https://github.com/jvfe)'s [fork](https://github.com/jvfe/cookiecutter-snekpack) of [@cthoyt](https://github.com/cthoyt)'s
[cookiecutter-snekpack](https://github.com/cthoyt/cookiecutter-snekpack) template.
## 🛠️ For Developers
<details>
<summary>See developer instructions</summary>
The final section of the README is for if you want to get involved by making a code contribution.
### Development Installation
To install in development mode, use the following:
```bash
$ git clone git+https://github.com/jvfe/wdbio.git
$ cd wdbio
$ pip install -e .
```
### 🥼 Testing
After cloning the repository and installing `tox` with `pip install tox`, the unit tests in the `tests/` folder can be
run reproducibly with:
```shell
$ tox
```
Additionally, these tests are automatically re-run with each commit in a [GitHub Action](https://github.com/jvfe/wdbio/actions?query=workflow%3ATests).
### 📦 Making a Release
After installing the package in development mode and installing
`tox` with `pip install tox`, the commands for making a new release are contained within the `finish` environment
in `tox.ini`. Run the following from the shell:
```shell
$ tox -e finish
```
This script does the following:
1. Uses [Bump2Version](https://github.com/c4urself/bump2version) to switch the version number in the `setup.cfg` and
`wdbio/__init__.py` to not have the `-dev` suffix
2. Packages the code in both a tar archive and a wheel using [`build`](https://github.com/pypa/build)
3. Uploads to PyPI using [`twine`](https://github.com/pypa/twine). Be sure to have a `.pypirc` file configured to avoid the need for manual input at this
step
4. Push to GitHub. You'll need to make a release going with the commit where the version was bumped.
5. Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can
use `tox -e bumpversion -- minor` after.
</details>
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You have an entire set of docs for later.\n\n\n\n## \ud83d\ude80 Installation\n\n<!-- Uncomment this section after your first ``tox -e finish``\nThe most recent release can be installed from\n[PyPI](https://pypi.org/project/wdbio/) with:\n\n```bash\n$ pip install wdbio\n```\n-->\n\nThe most recent code and data can be installed directly from GitHub with:\n\n```bash\n$ pip install git+https://github.com/jvfe/wdbio.git\n```\n\n## \ud83d\udc50 Contributing\n\nContributions, whether filing an issue, making a pull request, or forking, are appreciated. 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