| Name | zarrtraj JSON |
| Version |
0.3.0
JSON |
| download |
| home_page | None |
| Summary | This is a kit that provides the ability to read and write trajectory data in the Zarr file format |
| upload_time | 2024-11-06 04:43:54 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.10.0 |
| license | GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. The licenses for most software and other practical works are designed to take away your freedom to share and change the works. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change all versions of a program--to make sure it remains free software for all its users. We, the Free Software Foundation, use the GNU General Public License for most of our software; it applies also to any other work released this way by its authors. You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. 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| keywords |
molecular
simulations
|
| VCS |
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| bugtrack_url |
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| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
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zarrtraj
==============================
[//]: # (Badges)
| **Latest release** | [![Last release tag][badge_release]][url_latest_release] ![GitHub commits since latest release (by date) for a branch][badge_commits_since] [![Documentation Status][badge_docs]][url_docs]|
| :----------------- | :------- |
| **Status** | [![GH Actions Status][badge_actions]][url_actions] [![codecov][badge_codecov]][url_codecov] |
| **Community** | [![License: GPL v3][badge_license]][url_license] [![Powered by MDAnalysis][badge_mda]][url_mda]|
[badge_actions]: https://github.com/Becksteinlab/zarrtraj/actions/workflows/gh-ci.yaml/badge.svg
[badge_codecov]: https://codecov.io/gh/Becksteinlab/zarrtraj/branch/main/graph/badge.svg
[badge_commits_since]: https://img.shields.io/github/commits-since/Becksteinlab/zarrtraj/latest
[badge_docs]: https://readthedocs.org/projects/zarrtraj/badge/?version=latest
[badge_license]: https://img.shields.io/badge/License-GPLv3-blue.svg
[badge_mda]: https://img.shields.io/badge/powered%20by-MDAnalysis-orange.svg?logoWidth=16&logo=data:image/x-icon;base64,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[url_actions]: https://github.com/Becksteinlab/zarrtraj/actions?query=branch%3Amain+workflow%3Agh-ci
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[url_docs]: https://zarrtraj.readthedocs.io/en/latest/?badge=latest
[url_latest_release]: https://github.com/Becksteinlab/zarrtraj/releases
[url_license]: https://www.gnu.org/licenses/gpl-3.0.html
[url_mda]: https://www.mdanalysis.org
Zarrtraj is an MDAnalysis MDAKit that provides the ability to read and write H5MD-formatted trajectory data in MDAnalysis using Zarr.
Zarrtraj can read trajectories locally and from AWS S3, Google Cloud Buckets, and Azure Blob Storage & DataLakes.
It can read both [H5MD-formatted files stored in hdf5](https://www.nongnu.org/h5md/h5md.html) (.h5md files) and [H5MD-formatted files stored
in Zarr](https://zarrtraj.readthedocs.io/en/latest/zarrmd-file-spec/v0.2.0.html) (.zarrmd files).
Zarrtraj is installable via both pip and conda forge:
```bash
pip install zarrtraj
```
```bash
conda install -c conda-forge zarrtraj
```
For more information on installation and usage, see the [zarrtraj documentation](https://zarrtraj.readthedocs.io/en/latest/index.html)
Zarrtraj is bound by a [Code of Conduct](https://github.com/Becksteinlab/zarrtraj/blob/main/CODE_OF_CONDUCT.md).
### Copyright
The Zarrtraj source code is hosted at https://github.com/Becksteinlab/zarrtraj
and is available under the GNU General Public License, version 3 (see the file [LICENSE](https://github.com/Becksteinlab/zarrtraj/blob/main/LICENSE)).
Copyright (c) 2024, Lawson Woods
#### Acknowledgements
Project based on the
[MDAnalysis Cookiecutter](https://github.com/MDAnalysis/cookiecutter-mda) version 0.1.
Please cite [MDAnalysis](https://github.com/MDAnalysis/mdanalysis#citation) when using Zarrtraj in published work.
Raw data
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"description": "zarrtraj\n==============================\n[//]: # (Badges)\n\n| **Latest release** | [![Last release tag][badge_release]][url_latest_release] ![GitHub commits since latest release (by date) for a branch][badge_commits_since] [![Documentation Status][badge_docs]][url_docs]|\n| :----------------- | :------- |\n| **Status** | [![GH Actions Status][badge_actions]][url_actions] [![codecov][badge_codecov]][url_codecov] |\n| **Community** | [![License: GPL v3][badge_license]][url_license] [![Powered by MDAnalysis][badge_mda]][url_mda]|\n\n[badge_actions]: https://github.com/Becksteinlab/zarrtraj/actions/workflows/gh-ci.yaml/badge.svg\n[badge_codecov]: https://codecov.io/gh/Becksteinlab/zarrtraj/branch/main/graph/badge.svg\n[badge_commits_since]: https://img.shields.io/github/commits-since/Becksteinlab/zarrtraj/latest\n[badge_docs]: https://readthedocs.org/projects/zarrtraj/badge/?version=latest\n[badge_license]: https://img.shields.io/badge/License-GPLv3-blue.svg\n[badge_mda]: https://img.shields.io/badge/powered%20by-MDAnalysis-orange.svg?logoWidth=16&logo=data:image/x-icon;base64,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\n[badge_release]: https://img.shields.io/github/release-pre/Becksteinlab/zarrtraj.svg\n[url_actions]: https://github.com/Becksteinlab/zarrtraj/actions?query=branch%3Amain+workflow%3Agh-ci\n[url_codecov]: https://codecov.io/gh/Becksteinlab/zarrtraj/branch/main\n[url_docs]: https://zarrtraj.readthedocs.io/en/latest/?badge=latest\n[url_latest_release]: https://github.com/Becksteinlab/zarrtraj/releases\n[url_license]: https://www.gnu.org/licenses/gpl-3.0.html\n[url_mda]: https://www.mdanalysis.org\n\nZarrtraj is an MDAnalysis MDAKit that provides the ability to read and write H5MD-formatted trajectory data in MDAnalysis using Zarr. \nZarrtraj can read trajectories locally and from AWS S3, Google Cloud Buckets, and Azure Blob Storage & DataLakes.\nIt can read both [H5MD-formatted files stored in hdf5](https://www.nongnu.org/h5md/h5md.html) (.h5md files) and [H5MD-formatted files stored \nin Zarr](https://zarrtraj.readthedocs.io/en/latest/zarrmd-file-spec/v0.2.0.html) (.zarrmd files).\n\nZarrtraj is installable via both pip and conda forge:\n```bash\npip install zarrtraj\n```\n```bash\nconda install -c conda-forge zarrtraj\n```\n\nFor more information on installation and usage, see the [zarrtraj documentation](https://zarrtraj.readthedocs.io/en/latest/index.html)\n\nZarrtraj is bound by a [Code of Conduct](https://github.com/Becksteinlab/zarrtraj/blob/main/CODE_OF_CONDUCT.md).\n\n### Copyright\n\nThe Zarrtraj source code is hosted at https://github.com/Becksteinlab/zarrtraj\nand is available under the GNU General Public License, version 3 (see the file [LICENSE](https://github.com/Becksteinlab/zarrtraj/blob/main/LICENSE)).\n\nCopyright (c) 2024, Lawson Woods\n\n\n#### Acknowledgements\n \nProject based on the \n[MDAnalysis Cookiecutter](https://github.com/MDAnalysis/cookiecutter-mda) version 0.1.\nPlease cite [MDAnalysis](https://github.com/MDAnalysis/mdanalysis#citation) when using Zarrtraj in published work.\n",
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"license": "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. The licenses for most software and other practical works are designed to take away your freedom to share and change the works. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change all versions of a program--to make sure it remains free software for all its users. We, the Free Software Foundation, use the GNU General Public License for most of our software; it applies also to any other work released this way by its authors. You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. 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