| Name | Version | Summary | date |
| treeswift |
1.1.42 |
TreeSwift: Fast tree module for Python 2 and 3 |
2024-04-02 17:27:02 |
| LAML |
0.0.2 |
LAML: Lineage Analysis via Maximum Likelihood |
2024-03-19 03:27:09 |
| bacpage |
2024.3.8 |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes |
2024-03-11 12:53:35 |
| scmail |
1.0.9 |
sc-MAIL: single-cell Maximum-likelihood Ancestral Inference for Lineage-tracing |
2024-01-31 19:29:25 |
| phytreeviz |
0.2.0 |
Simple phylogenetic tree visualization python package |
2024-01-29 10:22:39 |
| treesimulator |
0.1.9 |
Simulation of rooted phylogenetic trees under a given Multitype Birth–Death model. |
2024-01-15 13:16:35 |
| commonnexus |
1.9.2 |
A nexus (phylogenetics) file reader and writer (.nex, .trees) |
2023-11-26 12:00:56 |
| phasty |
0.5.3 |
A Python interface for PHAST (phylogenetic analysis with space/time models). |
2023-11-15 05:24:28 |
| torchtree-scipy |
1.0.0 |
Plugin for using scipy in torchtree |
2023-11-14 04:57:55 |
| auto-phylo-pipeliner |
1.0.1 |
A GUI to create auto-phylo pipelines. |
2023-10-31 15:53:53 |
| tskit |
0.5.6 |
The tree sequence toolkit. |
2023-10-10 10:59:18 |
| cafeplotter |
0.2.0 |
A tool for plotting CAFE5 gene family expansion/contraction result |
2023-09-22 12:59:36 |
| TreeProfiler |
1.2.0 |
TreeProfiler is command-line tool for profiling metadata table into phylogenetic tree with descriptive analysis and output visualization |
2023-09-21 09:17:48 |
| DendroPy |
4.6.1 |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
2023-06-09 05:34:21 |
| phylomatcher |
0.3.2 |
A tool for parsing and extracting taxon synonyms. |
2023-05-12 18:25:51 |
| taxomatcher |
0.2 |
A tool for parsing and extracting taxon synonyms. |
2023-05-05 19:26:14 |
| DendroPy-calver |
2023.330.2 |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. Calendar-versioned fork tracking DendroPy main branch. |
2023-03-30 06:22:01 |
| phylostan |
1.0.5.post1 |
Phylogenetic inference with Stan |
2022-12-07 03:23:54 |
| python-nexus |
2.9.0 |
A nexus (phylogenetics) file reader (.nex, .trees) |
2022-09-12 13:00:11 |
| ete3 |
3.1.2 |
A Python Environment for (phylogenetic) Tree Exploration |
2020-08-30 07:14:34 |