PyDigger - unearthing stuff about Python


NameVersionSummarydate
orthoani 0.6.0 A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. 2024-11-06 15:02:19
pyhmmer 0.10.15 Cython bindings and Python interface to HMMER3. 2024-10-08 15:40:15
mini3di 0.2.1 A NumPy port of the foldseek code for encoding structures to 3di. 2024-09-15 21:48:23
pronto 2.5.8 Python frontend to ontologies. 2024-09-14 15:53:26
peptides 0.3.4 Physicochemical properties, indices and descriptors for amino-acid sequences. 2024-09-09 11:51:45
lightmotif 0.9.1 PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. 2024-09-02 22:37:25
pytrimal 0.8.0 Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. 2024-08-28 14:26:57
pyrodigal-gv 0.3.2 A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. 2024-08-15 14:43:43
pymemesuite 0.1.0a3 Cython bindings and Python interface to the MEME suite. 2024-06-14 11:49:37
pyskani 0.1.2 PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. 2024-06-13 21:49:42
gb-io 0.3.3 A Python interface to gb-io, a fast GenBank parser and serializer written in Rust. 2024-04-13 23:02:36
nafcodec 0.2.0 PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. 2024-04-10 09:49:14
gecco-tool 0.9.10 Gene cluster prediction with Conditional random fields. 2024-02-27 16:10:51
torch-treecrf 0.2.0 A PyTorch implementation of Tree-structured Conditional Random Fields. 2024-02-16 12:37:02
fastobo 0.12.3 Faultless AST for Open Biomedical Ontologies in Python. 2023-12-06 12:34:30
nmrml2isa 0.3.3 nmrml2isa - nmrML to ISA-Tab parsing tool 2023-11-06 16:00:57
fs.sshfs 1.0.2 Pyfilesystem2 over SSH using paramiko 2023-08-17 09:45:45
pyhmmer-arm 0.7.5 Cython bindings and Python interface to HMMER3. 2023-04-19 00:34:24
fs.smbfs 1.0.6 Pyfilesystem2 over SMB using pysmb 2022-11-02 12:02:30
ffpb 0.4.1 A progress bar for ffmpeg. Yay ! 2021-02-13 13:06:49
Martin Larralde
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