| Name | Version | Summary | date |
| orthoani |
0.6.0 |
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. |
2024-11-06 15:02:19 |
| pyhmmer |
0.10.15 |
Cython bindings and Python interface to HMMER3. |
2024-10-08 15:40:15 |
| mini3di |
0.2.1 |
A NumPy port of the foldseek code for encoding structures to 3di. |
2024-09-15 21:48:23 |
| pronto |
2.5.8 |
Python frontend to ontologies. |
2024-09-14 15:53:26 |
| peptides |
0.3.4 |
Physicochemical properties, indices and descriptors for amino-acid sequences. |
2024-09-09 11:51:45 |
| lightmotif |
0.9.1 |
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. |
2024-09-02 22:37:25 |
| pytrimal |
0.8.0 |
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
2024-08-28 14:26:57 |
| pyrodigal-gv |
0.3.2 |
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. |
2024-08-15 14:43:43 |
| pymemesuite |
0.1.0a3 |
Cython bindings and Python interface to the MEME suite. |
2024-06-14 11:49:37 |
| pyskani |
0.1.2 |
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. |
2024-06-13 21:49:42 |
| gb-io |
0.3.3 |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust. |
2024-04-13 23:02:36 |
| nafcodec |
0.2.0 |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. |
2024-04-10 09:49:14 |
| gecco-tool |
0.9.10 |
Gene cluster prediction with Conditional random fields. |
2024-02-27 16:10:51 |
| torch-treecrf |
0.2.0 |
A PyTorch implementation of Tree-structured Conditional Random Fields. |
2024-02-16 12:37:02 |
| fastobo |
0.12.3 |
Faultless AST for Open Biomedical Ontologies in Python. |
2023-12-06 12:34:30 |
| nmrml2isa |
0.3.3 |
nmrml2isa - nmrML to ISA-Tab parsing tool |
2023-11-06 16:00:57 |
| fs.sshfs |
1.0.2 |
Pyfilesystem2 over SSH using paramiko |
2023-08-17 09:45:45 |
| pyhmmer-arm |
0.7.5 |
Cython bindings and Python interface to HMMER3. |
2023-04-19 00:34:24 |
| fs.smbfs |
1.0.6 |
Pyfilesystem2 over SMB using pysmb |
2022-11-02 12:02:30 |
| ffpb |
0.4.1 |
A progress bar for ffmpeg. Yay ! |
2021-02-13 13:06:49 |
Martin Larralde