| Name | Version | Summary | date |
| pyrodigal |
3.5.2 |
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. |
2024-09-04 12:30:12 |
| lightmotif |
0.9.1 |
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. |
2024-09-02 22:37:25 |
| pyfamsa |
0.5.1 |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. |
2024-08-28 21:55:56 |
| pytrimal |
0.8.0 |
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
2024-08-28 14:26:57 |
| peptides |
0.3.3.post1 |
Physicochemical properties, indices and descriptors for amino-acid sequences. |
2024-08-26 14:23:21 |
| pyrodigal-gv |
0.3.2 |
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. |
2024-08-15 14:43:43 |
| pyjess |
0.3.1 |
Cython bindings and Python interface to JESS, a 3D template matching software. |
2024-07-18 16:36:34 |
| pyhmmer |
0.10.14 |
Cython bindings and Python interface to HMMER3. |
2024-07-16 12:41:53 |
| scoring-matrices |
0.2.2 |
Dependency free, Cython-compatible scoring matrices to use with biological sequences. |
2024-06-24 10:43:34 |
| diced |
0.1.1 |
Rust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data. |
2024-06-19 14:38:18 |
| pymemesuite |
0.1.0a3 |
Cython bindings and Python interface to the MEME suite. |
2024-06-14 11:49:37 |
| pyskani |
0.1.2 |
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. |
2024-06-13 21:49:42 |
| pytantan |
0.1.1 |
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. |
2024-05-15 09:53:14 |
| pyswrd |
0.2.0 |
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search. |
2024-05-15 09:35:01 |
| mini3di |
0.1.1 |
A NumPy port of the foldseek code for encoding structures to 3di. |
2024-05-10 14:56:48 |
| pyopal |
0.6.0 |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner. |
2024-05-08 16:37:52 |
| pronto |
2.5.7 |
Python frontend to ontologies. |
2024-04-24 13:39:46 |
| gb-io |
0.3.3 |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust. |
2024-04-13 23:02:36 |
| nafcodec |
0.2.0 |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. |
2024-04-10 09:49:14 |
| gecco-tool |
0.9.10 |
Gene cluster prediction with Conditional random fields. |
2024-02-27 16:10:51 |
Martin Larralde