| Name | Version | Summary | date |
| audreylab-gwas-postqc |
0.1.0 |
A lightweight tool for performing post-GWAS QC on Regenie outputs. |
2025-07-13 13:23:00 |
| mlbi-datasets |
0.2.0 |
MLBI Lab Datasets |
2025-07-13 07:32:24 |
| scoda-viz |
0.3.0 |
Visualization Toolkits for SCODA results. |
2025-07-13 07:31:36 |
| spaed |
1.0.5 |
A module for the segmentation of phage endolysin domains based on the PAE matrix from AlphaFold. |
2025-07-12 18:42:07 |
| geofetch |
0.12.8 |
Downloads data and metadata from GEO and SRA and creates standard PEPs. |
2025-07-11 17:25:37 |
| cogent3 |
2025.7.10a2 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-11 11:40:13 |
| scmcp-shared |
0.6.3 |
A shared function libray for scmcphub |
2025-07-09 21:27:34 |
| abcoder |
0.2.1 |
Agentic bioinformatics coder |
2025-07-09 21:25:28 |
| snpio |
1.5.15 |
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses. |
2025-07-08 18:51:28 |
| bacformer |
0.1.0 |
Modeling bacterial genomes. |
2025-07-08 16:22:51 |
| crisprzip |
1.2.0 |
A kinetic model of CRISPR-Cas target recognition. |
2025-07-08 11:13:14 |
| molactivity |
3.0 |
Molecular activity prediction using transformer neural networks with 5 operational modes |
2025-07-08 10:37:02 |
| nf-core |
3.3.2 |
Helper tools for use with nf-core Nextflow pipelines. |
2025-07-08 09:51:27 |
| resdk |
22.0.0 |
Resolwe SDK for Python |
2025-04-01 07:43:06 |
| instanovo |
1.1.0 |
InstaNovo enables diffusion-powered de novo peptide sequencing in large scale proteomics experiments |
2025-03-28 12:09:51 |
| refget |
0.8.0 |
Python client for refget |
2025-03-11 21:31:04 |
| spatools |
0.0.65 |
This comprehensive toolkit enables the analysis of multiple spatial transcriptomics datasets, offering a wide range of analytical capabilities. It supports various types of analyses, including detailed plotting and advanced image analysis, to help you gain deeper insights into your spatial transcriptomics data. |
2025-03-11 05:09:49 |
| mhctyper |
0.1.3 |
MHC Class I and II typer based on polysolver algorithm. |
2025-02-26 19:32:51 |
| mach2 |
1.0.0 |
Migration Analysis of Clonal History 2 |
2025-02-25 16:39:53 |
| kneaddata |
0.12.2 |
None |
2025-02-25 01:00:38 |