| Name | Version | Summary | date |
| agtools |
1.0.1 |
agtools: A Software Framework to Manipulate Assembly Graphs |
2025-09-09 07:39:34 |
| biobatchnet |
0.1.2 |
A deep learning framework for batch effect correction in biological data |
2025-09-09 01:56:14 |
| affine-gaps |
0.2.3 |
Numba-accelerated Python implementation of affine gap penalty extensions for Needleman-Wunsch and Smith-Waterman algorithms |
2025-09-08 19:22:33 |
| alphabase |
1.7.0 |
An infrastructure Python package of the AlphaX ecosystem |
2025-09-08 13:38:12 |
| decontx-python |
0.2.0 |
Python implementation of DecontX for removing ambient RNA contamination from single-cell RNA-seq data |
2025-09-08 13:23:10 |
| Gen-EpiX |
6.0.0 |
Genomic Epidemiology platform for disease X |
2025-09-08 11:38:47 |
| scpair |
0.1.0 |
scPair: boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases |
2025-09-08 04:30:09 |
| cogent3 |
2025.9.8a1 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-09-08 00:16:18 |
| stringfix |
0.8.2 |
GTF-guided transcriptome assembler. |
2025-09-07 09:56:55 |
| treetag |
0.1.1 |
Hierarchical cell-type tagging with YAML ontologies and markers. |
2025-09-06 21:32:48 |
| plannotate-python |
1.2.7 |
Automated annotation of engineered plasmids using sequence similarity searches |
2025-09-06 14:38:11 |
| DockSuiteX |
2.0.2 |
All-in-one protein-ligand docking package for Windows with bundled tools |
2025-09-06 13:18:01 |
| scxpand |
0.1.0 |
Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing |
2025-09-06 10:42:14 |
| cutseq |
0.0.68 |
Automatically cut adapter / barcode / UMI from NGS data |
2025-09-05 17:24:56 |
| abcoder |
0.3.1 |
Agentic bioinformatics coder |
2025-09-05 09:38:28 |
| hgvs |
1.5.6 |
HGVS Parser, Formatter, Mapper, Validator |
2025-09-04 19:27:57 |
| sublyme |
1.2.1 |
A SUBLYME pipeline for Uncovering Bacteriophage Lysins in Metagenomic Datasets |
2025-09-04 15:48:49 |
| pybio |
0.8.3 |
pybio genomics |
2025-09-04 08:44:29 |
| deeprm |
1.0.2 |
DeepRM: Deep Learning for RNA Modification Detection using Nanopore Direct RNA Sequencing |
2025-09-04 06:22:50 |
| pyobo |
0.12.7 |
A python package for handling and generating OBO |
2025-09-03 20:52:20 |