| Name | Version | Summary | date |
| gemsembler |
0.11.5 |
A tool for assembling and comparing several types of Genome-Scale Metabolic Models. |
2025-08-15 12:32:36 |
| just-agents-core |
0.8.3 |
Just Agents - Base Package |
2025-08-15 02:09:34 |
| CellProfiler-nightly |
5.0.0.dev265 |
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. |
2025-08-12 19:09:01 |
| cellprofiler-core-nightly |
5.0.0.dev265 |
cellprofiler-core implements the bulk of CellProfiler's non-gui functionality |
2025-08-12 19:08:43 |
| cellprofiler-library-nightly |
5.0.0.dev265 |
cellprofiler-library implements CellProfiler's image processing and mathematical code, and is usable as a standalone library |
2025-08-12 19:08:34 |
| physicell-settings |
0.4.4 |
User-friendly Python package for generating PhysiCell_settings.xml configuration files |
2025-08-08 20:50:36 |
| genesummary |
0.3.2 |
A comprehensive Python package for retrieving detailed gene information from multiple public databases |
2025-08-08 18:17:51 |
| sc-supertree |
2025.7.31 |
Spectral Cluster Supertree. |
2025-07-31 04:14:53 |
| indra |
1.24.0 |
Integrated Network and Dynamical Reasoning Assembler |
2025-07-30 23:47:17 |
| metagene |
0.0.14 |
Metagene Profiling Analysis and Visualization |
2025-07-30 13:39:11 |
| pinetree |
0.5.0 |
stochastic simulation of gene expression with site-specific translation rates |
2025-07-21 20:38:30 |
| bebi103 |
0.1.28 |
Python utilities for the Caltech course BE/Bi 103: Data Analysis in the Biological Sciences. |
2025-07-11 21:09:54 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| multiqc |
1.30 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-07-09 10:24:38 |
| nf-core |
3.3.2 |
Helper tools for use with nf-core Nextflow pipelines. |
2025-07-08 09:51:27 |
| bioontologies |
0.6.0 |
Tools for biomedical ontologies |
2025-02-09 13:41:24 |
| transit1 |
3.3.19 |
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions. |
2025-02-07 22:42:40 |
| phenopype |
6.1.0 |
A phenotyping pipeline for python |
2025-02-03 23:13:53 |
| phenopype-plugins |
0.2.0 |
AI and other plugins for phenopype |
2025-02-03 03:17:34 |
| nafcodec |
0.3.1 |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. |
2025-01-31 14:28:03 |