| Name | Version | Summary | date |
| pinetree |
0.5.0 |
stochastic simulation of gene expression with site-specific translation rates |
2025-07-21 20:38:30 |
| physicell-settings |
0.2.1 |
User-friendly Python package for generating PhysiCell_settings.xml configuration files |
2025-07-20 15:48:51 |
| gemsembler |
0.11.2 |
A tool for assembling and comparing several types of Genome-Scale Metabolic Models. |
2025-07-15 14:25:42 |
| bebi103 |
0.1.28 |
Python utilities for the Caltech course BE/Bi 103: Data Analysis in the Biological Sciences. |
2025-07-11 21:09:54 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| multiqc |
1.30 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-07-09 10:24:38 |
| nf-core |
3.3.2 |
Helper tools for use with nf-core Nextflow pipelines. |
2025-07-08 09:51:27 |
| just-agents-core |
0.6.2 |
Just Agents - Base Package |
2025-03-01 20:14:41 |
| CellProfiler-nightly |
5.0.0.dev194 |
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. |
2025-02-10 13:38:22 |
| cellprofiler-core-nightly |
5.0.0.dev194 |
cellprofiler-core implements the bulk of CellProfiler's non-gui functionality |
2025-02-10 13:38:02 |
| cellprofiler-library-nightly |
5.0.0.dev194 |
cellprofiler-library implements CellProfiler's image processing and mathematical code, and is usable as a standalone library |
2025-02-10 13:37:52 |
| bioontologies |
0.6.0 |
Tools for biomedical ontologies |
2025-02-09 13:41:24 |
| transit1 |
3.3.19 |
TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions. |
2025-02-07 22:42:40 |
| phenopype |
6.1.0 |
A phenotyping pipeline for python |
2025-02-03 23:13:53 |
| phenopype-plugins |
0.2.0 |
AI and other plugins for phenopype |
2025-02-03 03:17:34 |
| nafcodec |
0.3.1 |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. |
2025-01-31 14:28:03 |
| bioservices |
1.12.0 |
Access to Biological Web Services from Python |
2025-01-27 13:08:44 |
| byotrack |
1.3.1 |
Biological particle tracking with Python |
2024-12-31 18:47:20 |
| sinetra |
0.1.3 |
Generate synthetic data for biological particle tracking |
2024-12-28 12:07:58 |
| snapatac2 |
2.8.0 |
SnapATAC2: Single-cell epigenomics analysis pipeline |
2024-12-13 15:35:06 |