| Name | Version | Summary | date |
| genome-uploader |
2.3.4 |
Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). This script generates xmls and manifests necessary for submission with webin-cli. |
2025-07-16 16:13:37 |
| checkamg |
0.3.2 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-09 20:32:26 |
| plntree |
0.1.0 |
Package implementing PLN-Tree models and TaxaPLN augmentation. |
2025-07-08 12:18:45 |
| Binette |
1.1.1 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2025-03-19 21:37:41 |
| metator |
1.3.6 |
A pipeline for binning metagenomic datasets from metaHiC data. |
2025-02-21 11:20:09 |
| mgnify-pipelines-toolkit |
0.2.0 |
Collection of scripts and tools for MGnify pipelines |
2025-01-24 14:19:11 |
| kegg-pathways-completeness |
1.2.1 |
The tool counts completeness of each KEGG pathway for protein sequences. |
2025-01-20 23:07:37 |
| assembly-uploader |
1.2.0 |
Python scripts to upload primary metagenome and metatranscriptome assemblies to ENA on a per-study basis. This script generates xmls to register a new study and create manifests necessary for submission with webin-cli. |
2024-12-12 16:21:46 |
| woltka |
0.1.7 |
versatile meta-omic data classifier |
2024-10-08 20:55:55 |
| fetch-tool |
1.0.3 |
Utility to fetch public and private RAW read and assembly files from the ENA |
2024-10-03 15:35:43 |
| metav |
1.0.6 |
rapid detection and classification of viruses in metagenomics sequencing. |
2024-08-26 10:33:53 |
| cocopye |
0.5.0 |
Feature-based prediction of genome quality indices |
2024-07-17 22:59:24 |
| midasv3 |
1.0.1 |
https://midas2.readthedocs.io/en/latest/ |
2024-07-15 16:05:35 |
| MetaSBT |
0.1.3 |
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees |
2024-06-28 09:24:31 |
| SuperPang |
1.3.0.post1 |
Non-redundant pangenome assemblies from multiple genomes or bins |
2024-06-14 11:32:19 |
| taxpasta |
0.7.0 |
TAXonomic Profile Aggregation and STAndardisation |
2024-06-08 12:22:27 |
| genomeuploader |
2.0.0 |
Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). This script generates xmls and manifests necessary for submission with webin-cli. |
2024-04-25 16:24:14 |