MetaSBT


NameMetaSBT JSON
Version 0.1.3 PyPI version JSON
download
home_pagehttp://github.com/cumbof/MetaSBT
SummaryA scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees
upload_time2024-06-28 09:24:31
maintainerNone
docs_urlNone
authorFabio Cumbo
requires_python>=3.8
licenseMIT
keywords bioinformatics characterization classification genomes metagenome-assembled genomes metagenomics microbiome profiling sequence bloom trees
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # MetaSBT

__A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees__

Please visit the official [wiki](https://github.com/cumbof/MetaSBT/wiki) to get started playing with MetaSBT.

Also note that we maintain a series of public databases built with our framework over a set of curated microbial genomes. They are all indexed in our [MetaSBT-DBs](https://github.com/cumbof/MetaSBT-DBs) repository.

> __Note:__
> Are you interested in using our software and databases, or you want to build your own private database, but you do not have enough computational resources? Get in touch with us, we are always happy to collaborate!

## Credits

Please credit our work in your manuscript by citing:

> _Manuscript in preparation_

## Contributing

Long-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).

Please, (i) be sure that there are no existing issues/PR concerning the same bug or improvement before opening a new issue/PR; (ii) write a clear and concise description of what the bug/PR is about; (iii) specifying the list of steps to reproduce the behavior in addition to versions and other technical details is highly recommended.

## Support

If you need support, please open an [Issue](https://github.com/cumbof/MetaSBT/issues) or a new [Discussion](https://github.com/cumbof/MetaSBT/discussions). We will be happy to answer your questions and help you troubleshoot any kind of issue concerning our framework.

Copyright © 2024 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT/blob/main/LICENSE) for additional details.

            

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