# MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Please visit the official [wiki](https://github.com/cumbof/MetaSBT/wiki) to get started playing with MetaSBT.
Also note that we maintain a series of public databases built with our framework over a set of curated microbial genomes. They are all indexed in our [MetaSBT-DBs](https://github.com/cumbof/MetaSBT-DBs) repository.
> **Note**
> Are you interested in using our software and databases, or you want to build your own private database, but you do not have enough computational resources? Get in touch with us, we are always happy to collaborate!
## Credits
Please credit our work in your manuscript by citing:
> _Manuscript in preparation_
## Contributing
Long-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).
Please, (i) be sure that there are no existing issues/PR concerning the same bug or improvement before opening a new issue/PR; (ii) write a clear and concise description of what the bug/PR is about; (iii) specifying the list of steps to reproduce the behavior in addition to versions and other technical details is highly recommended.
## Support
If you need support, please open an [Issue](https://github.com/cumbof/MetaSBT/issues) or a new [Discussion](https://github.com/cumbof/MetaSBT/discussions). We will be happy to answer your questions and help you troubleshoot any kind of issue concerning our framework.
Copyright © 2022 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT/blob/main/LICENSE) for additional details.
Raw data
{
"_id": null,
"home_page": "http://github.com/cumbof/MetaSBT",
"name": "MetaSBT",
"maintainer": "",
"docs_url": null,
"requires_python": ">=3.8",
"maintainer_email": "",
"keywords": "bioinformatics,characterization,classification,genomes,metagenome-assembled genomes,metagenomics,microbiome,profiling,sequence bloom trees",
"author": "Fabio Cumbo",
"author_email": "fabio.cumbo@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/da/c4/81601bb0ca8c21781ab19e446e681f1e7dd00ec4384e9eb442b42bc77289/MetaSBT-0.1.2.tar.gz",
"platform": "Linux",
"description": "# MetaSBT\n\nA scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees\n\nPlease visit the official [wiki](https://github.com/cumbof/MetaSBT/wiki) to get started playing with MetaSBT.\n\nAlso note that we maintain a series of public databases built with our framework over a set of curated microbial genomes. They are all indexed in our [MetaSBT-DBs](https://github.com/cumbof/MetaSBT-DBs) repository.\n\n> **Note**\n> Are you interested in using our software and databases, or you want to build your own private database, but you do not have enough computational resources? Get in touch with us, we are always happy to collaborate!\n\n## Credits\n\nPlease credit our work in your manuscript by citing:\n\n> _Manuscript in preparation_\n\n## Contributing\n\nLong-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).\n\nPlease, (i) be sure that there are no existing issues/PR concerning the same bug or improvement before opening a new issue/PR; (ii) write a clear and concise description of what the bug/PR is about; (iii) specifying the list of steps to reproduce the behavior in addition to versions and other technical details is highly recommended.\n\n## Support\n\nIf you need support, please open an [Issue](https://github.com/cumbof/MetaSBT/issues) or a new [Discussion](https://github.com/cumbof/MetaSBT/discussions). We will be happy to answer your questions and help you troubleshoot any kind of issue concerning our framework.\n\nCopyright \u00a9 2022 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT/blob/main/LICENSE) for additional details.\n",
"bugtrack_url": null,
"license": "MIT",
"summary": "A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees",
"version": "0.1.2",
"project_urls": {
"Databases": "https://github.com/cumbof/MetaSBT-DBs",
"Discussions": "https://github.com/cumbof/MetaSBT/discussions",
"Download": "https://pypi.org/project/MetaSBT/",
"Homepage": "http://github.com/cumbof/MetaSBT",
"Issues": "https://github.com/cumbof/MetaSBT/issues",
"Source": "https://github.com/cumbof/MetaSBT",
"Wiki": "https://github.com/cumbof/MetaSBT/wiki"
},
"split_keywords": [
"bioinformatics",
"characterization",
"classification",
"genomes",
"metagenome-assembled genomes",
"metagenomics",
"microbiome",
"profiling",
"sequence bloom trees"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "dac481601bb0ca8c21781ab19e446e681f1e7dd00ec4384e9eb442b42bc77289",
"md5": "e2ef24b38f4c8af472843a462d184e1a",
"sha256": "63e80e042700f81b05a1a2e329d79c8ecaec15117784799e7a62a0d82cfb2b61"
},
"downloads": -1,
"filename": "MetaSBT-0.1.2.tar.gz",
"has_sig": false,
"md5_digest": "e2ef24b38f4c8af472843a462d184e1a",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.8",
"size": 66347,
"upload_time": "2023-05-16T19:03:02",
"upload_time_iso_8601": "2023-05-16T19:03:02.269339Z",
"url": "https://files.pythonhosted.org/packages/da/c4/81601bb0ca8c21781ab19e446e681f1e7dd00ec4384e9eb442b42bc77289/MetaSBT-0.1.2.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2023-05-16 19:03:02",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "cumbof",
"github_project": "MetaSBT",
"travis_ci": false,
"coveralls": false,
"github_actions": false,
"tox": true,
"lcname": "metasbt"
}
JSON
