| Name | Version | Summary | date |
| snippy-nextgen |
1.3.0 |
The Next Generation of Microbial Variant Calling with Snippy |
2025-08-06 08:22:41 |
| partis-bcr |
1.0.0 |
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference |
2025-08-05 22:46:19 |
| biochemical-data-connectors |
3.2.2 |
A Python package to extract chemical, biochemical, and bioactivity data from public databases like ORD, ChEMBL and PubChem. |
2025-08-05 00:28:55 |
| ee-metadata |
0.2.2 |
A high-performance CLI tool from eDNA-Explorer to generate metadata from a directory of fastq files. |
2025-08-05 00:27:02 |
| dna-ibp |
1.1.0 |
Command-line tool for DNA sequence analysis and processing |
2025-08-04 23:07:32 |
| cytetype |
0.9.0 |
Python client for characterization of clusters from single-cell RNA-seq data. |
2025-08-03 23:53:58 |
| hbat |
2.2.14 |
Hydrogen Bond Analysis Tool for PDB structures |
2025-08-03 23:07:32 |
| pyrion |
0.1.3 |
A fast and efficient bioinformatics library for genomic data processing |
2025-08-02 18:47:47 |
| fast-select |
0.2.0 |
A Sci-Kit Learn compatible Numba and CUDA-accelerated implementation of various feature selection algorithms. |
2025-08-01 19:50:45 |
| agrobiota-sdk |
0.1.0a8 |
An official SDK library for the AGROBIOTA environment |
2025-08-01 12:21:05 |
| pyxetabase |
3.1.0.dev22 |
A REST client for OpenCGA enterprise REST web services |
2025-08-01 10:12:42 |
| ampgen |
0.1.14 |
A de novo generation pipeline leveraging evolutionary information for broad-spectrum antimicrobial peptide design |
2025-08-01 08:30:11 |
| kmerdb |
0.9.5 |
Yet another k-mer counter for Genomics, Metagenomics, and Phylogenomics applications... |
2025-08-01 00:25:40 |
| biobb-adapters |
5.1.0 |
Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers. |
2025-07-31 14:22:14 |
| chewBBACA |
3.4.1 |
A complete suite for gene-by-gene schema creation and strain identification. |
2025-07-31 12:53:24 |
| genome-uploader |
2.4.0 |
Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). This script generates xmls and manifests necessary for submission with webin-cli. |
2025-07-31 10:52:12 |
| checkamg |
0.3.3 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-31 02:40:53 |
| genomic-benchmarks |
1.0.0 |
Genomic Benchmarks |
2025-07-30 12:24:26 |
| geo-mcp |
0.1.0 |
A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API |
2025-07-30 11:49:55 |
| omixvizpy |
0.1.0 |
A Python package for omics data visualization with a focus on PCA plotting |
2025-07-30 11:45:38 |