PyDigger - unearthing stuff about Python


NameVersionSummarydate
readtagger 0.2.0 Tags reads in a BAM file based on other BAM files. 2017-02-21 09:37:10
pyBigWig 0.3.3 A package for accessing bigWig files using libBigWig 2017-02-21 09:28:38
resdk 1.7.0 Resolwe SDK for Python 2017-02-20 17:39:31
anca 0.1.4 Anharmonic Conformational Analysis 2017-02-20 16:18:41
pypairix 0.0.9 Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. Input file : bgzipped text file, first sorted by two chromosome columns and then by the first position column. The file should accompany an index file (.px2) created with pairix (https://github.com/4dn-dcic/pairix). Pypairix works with Python >=2.7. Dependency: python-devel (python-dev for ubuntu), zlib (zlib1g-dev for ubuntu) if not already installed. Please reference the README for more information (https://github.com/4dn-dcic/pairix/blob/master/README.md) 2017-02-17 23:23:53
edlib 1.1.2.post2 Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance. 2017-02-17 09:52:20
NucleoATAC 0.3.4 python package for calling nucleosomes with ATAC-Seq 2017-02-17 05:57:30
presto 0.5.3 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. 2017-02-15 21:23:36
changeo 0.3.4 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. 2017-02-15 21:23:20
edrnsite.vanity 1.0.4 EDRN Site Vanity 2017-02-15 18:17:07
pydna 1.2.0a1 Contains classes and code for representing double stranded DNA and functions for simulating homologous recombination between DNA molecules. 2017-02-14 16:06:50
bioutils 0.2.2 miscellaneous simple bioinformatics utilities and lookup tables 2017-02-14 15:02:35
cooler 0.6.2 Sparse binary format for genomic interaction matrices 2017-02-12 19:38:20
CoreTracker 1.1.5 CoreTracker, A codon reassignment tracker 2017-02-12 18:12:31
singlem 0.7.1 Find de-novo operational taxonomic units (OTUs) from metagenome data 2017-02-11 06:32:05
genipe 1.3.2 An automatic genome-wide imputation pipeline. 2017-02-10 20:38:22
tag_reads 0.1.4 Tags reads in BAM files based on alignments in additional BAM files. 2017-02-10 17:59:57
pyplink 1.3.1 Python module to read binary Plink files. 2017-02-08 21:17:36
CLASHChimeras 0.2 Python package to find chimeras in CRAC/CLASH and HITS-CLIP datasets 2017-02-06 16:19:45
valerius 0.1.0 Biological sequence analysis tools. 2017-02-05 19:27:16