snippy-nextgen

Name	snippy-nextgen JSON
Version	1.2.0 JSON
	download
home_page	None
Summary	The Next Generation of Microbial Variant Calling with Snippy
upload_time	2025-08-01 09:34:26
maintainer	None
docs_url	None
author	None
requires_python	>=3.8
license	None
keywords	bioinformatics genomics microbial genomics snippy variant calling
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Snippy-NG



[![PyPI - Version](https://img.shields.io/pypi/v/snippy-nextgen.svg)](https://pypi.org/project/snippy-nextgen)
[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/snippy-nextgen.svg)](https://pypi.org/project/snippy-nextgen)
[![Test Coverage](https://raw.githubusercontent.com/centre-pathogen-genomics/snippy-ng/refs/heads/_xml_coverage_reports/data/tests/badge.svg)](https://app.codecov.io/github/centre-pathogen-genomics/snippy-ng)
![Downloads](https://img.shields.io/github/downloads/centre-pathogen-genomics/snippy-ng/total)
[![Benchmark](https://byob.yarr.is/centre-pathogen-genomics/snippy-ng/benchmark)](https://cpg.org.au/snippy-blog/posts/2024-10-10-snappy-snippy)
-----

🚨 Snippy-NG is under construction and should not replace Snippy 🚨
----

**Table of Contents**

- [Installation](#installation)
- [License](#license)

## Installation

`snippy` is available on [PyPI](https://pypi.org/project/snippy-nextgen/) and can be installed using `pip` (without external dependencies):
```console
pip install snippy-nextgen
```

The complete snippy-ng environment (including all dependencies) can be installed using the `snippy-ng` installer script. This script will install the latest version of `snippy-ng` and all its dependencies.

```console
curl -sSL https://github.com/centre-pathogen-genomics/snippy-ng/releases/latest/download/install.sh | bash -s -- --force
```

## License

`snippy-ng` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

            

Raw data

            {
    "_id": null,
    "home_page": null,
    "name": "snippy-nextgen",
    "maintainer": null,
    "docs_url": null,
    "requires_python": ">=3.8",
    "maintainer_email": null,
    "keywords": "bioinformatics, genomics, microbial genomics, snippy, variant calling",
    "author": null,
    "author_email": "Wytamma Wirth <wytamma.wirth@me.com>",
    "download_url": "https://files.pythonhosted.org/packages/26/1d/5a4c6adb43a511c5a809b58773f68b3d8d1aa828ffa6914749398d8370dd/snippy_nextgen-1.2.0.tar.gz",
    "platform": null,
    "description": "# Snippy-NG\n\n\n\n[![PyPI - Version](https://img.shields.io/pypi/v/snippy-nextgen.svg)](https://pypi.org/project/snippy-nextgen)\n[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/snippy-nextgen.svg)](https://pypi.org/project/snippy-nextgen)\n[![Test Coverage](https://raw.githubusercontent.com/centre-pathogen-genomics/snippy-ng/refs/heads/_xml_coverage_reports/data/tests/badge.svg)](https://app.codecov.io/github/centre-pathogen-genomics/snippy-ng)\n![Downloads](https://img.shields.io/github/downloads/centre-pathogen-genomics/snippy-ng/total)\n[![Benchmark](https://byob.yarr.is/centre-pathogen-genomics/snippy-ng/benchmark)](https://cpg.org.au/snippy-blog/posts/2024-10-10-snappy-snippy)\n-----\n\n\ud83d\udea8 Snippy-NG is under construction and should not replace Snippy \ud83d\udea8\n----\n\n**Table of Contents**\n\n- [Installation](#installation)\n- [License](#license)\n\n## Installation\n\n`snippy` is available on [PyPI](https://pypi.org/project/snippy-nextgen/) and can be installed using `pip` (without external dependencies):\n```console\npip install snippy-nextgen\n```\n\nThe complete snippy-ng environment (including all dependencies) can be installed using the `snippy-ng` installer script. This script will install the latest version of `snippy-ng` and all its dependencies.\n\n```console\ncurl -sSL https://github.com/centre-pathogen-genomics/snippy-ng/releases/latest/download/install.sh | bash -s -- --force\n```\n\n## License\n\n`snippy-ng` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.\n",
    "bugtrack_url": null,
    "license": null,
    "summary": "The Next Generation of Microbial Variant Calling with Snippy",
    "version": "1.2.0",
    "project_urls": {
        "Documentation": "https://github.com/centre-pathogen-genomics/snippy-ng#readme",
        "Issues": "https://github.com/centre-pathogen-genomics/snippy-ng/issues",
        "Source": "https://github.com/centre-pathogen-genomics/snippy-ng"
    },
    "split_keywords": [
        "bioinformatics",
        " genomics",
        " microbial genomics",
        " snippy",
        " variant calling"
    ],
    "urls": [
        {
            "comment_text": null,
            "digests": {
                "blake2b_256": "8625a9c1ce0412b9432ea87e23b8b0ab2a74a3a80184c7d598ec7aec8b32741d",
                "md5": "e089af9121cbe29d5c45d17546b1d879",
                "sha256": "e4ccd963d7dcff4d0a96287ef17976c22f8d2eaefda4be06eea515152490f3c5"
            },
            "downloads": -1,
            "filename": "snippy_nextgen-1.2.0-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "e089af9121cbe29d5c45d17546b1d879",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": ">=3.8",
            "size": 27002,
            "upload_time": "2025-08-01T09:34:24",
            "upload_time_iso_8601": "2025-08-01T09:34:24.931385Z",
            "url": "https://files.pythonhosted.org/packages/86/25/a9c1ce0412b9432ea87e23b8b0ab2a74a3a80184c7d598ec7aec8b32741d/snippy_nextgen-1.2.0-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": null,
            "digests": {
                "blake2b_256": "261d5a4c6adb43a511c5a809b58773f68b3d8d1aa828ffa6914749398d8370dd",
                "md5": "61e3bba671732e6345a204b0acdc6eef",
                "sha256": "7918aff09630a3b04ff996841b6bc51f78e29d2ca9a72a3e1b33f73aa02fc94c"
            },
            "downloads": -1,
            "filename": "snippy_nextgen-1.2.0.tar.gz",
            "has_sig": false,
            "md5_digest": "61e3bba671732e6345a204b0acdc6eef",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3.8",
            "size": 6845405,
            "upload_time": "2025-08-01T09:34:26",
            "upload_time_iso_8601": "2025-08-01T09:34:26.431999Z",
            "url": "https://files.pythonhosted.org/packages/26/1d/5a4c6adb43a511c5a809b58773f68b3d8d1aa828ffa6914749398d8370dd/snippy_nextgen-1.2.0.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2025-08-01 09:34:26",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "centre-pathogen-genomics",
    "github_project": "snippy-ng#readme",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "lcname": "snippy-nextgen"
}