| Name | Version | Summary | date |
| PyVCF3 |
1.0.3 |
Variant Call Format (VCF) parser for Python |
2022-02-15 11:43:13 |
| refgenie |
0.12.1 |
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file |
2021-11-04 16:58:07 |
| kipoiseq |
0.7.1 |
kipoiseq: sequence-based data-loaders for Kipoi |
2021-10-27 15:39:29 |
| edlib |
1.3.9 |
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance. |
2021-08-20 22:47:40 |
| ruffus |
2.8.4 |
Light-weight Python Computational Pipeline Management |
2020-04-24 19:58:08 |
| kipoi-veff |
0.3.1 |
kipoi_veff: variant effect prediction plugin for Kipoi |
2019-12-22 17:53:03 |
| eutils |
0.6.0 |
"Python interface to NCBI's eutilities API" |
2019-12-17 19:19:18 |
| nimfa |
1.4.0 |
A Python module for nonnegative matrix factorization |
2019-10-10 00:03:15 |
| micomplete |
1.1.1 |
Quality control of assembled genomes |
2019-07-25 16:05:10 |
| ypkpathway |
3.0.1 |
Simulation and documentation of metabolic pathway assemblies using the Yeast Pathway Kit. |
2019-06-11 12:27:59 |
| pypairix |
0.3.7 |
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md. |
2019-04-11 16:03:21 |
| velocyto |
0.17.17 |
RNA velocity analysis for single cell RNA-seq data |
2019-01-31 14:02:25 |
| markov-clustering |
0.0.6.dev0 |
Implementation of the Markov clustering (MCL) algorithm in python. |
2018-12-11 12:33:06 |
| GSVA |
1.0.6 |
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs. |
2018-07-08 15:22:48 |
| alfpy |
1.0.6 |
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics). |
2018-03-13 07:04:44 |
| biomart |
0.9.2 |
Python API that consumes the biomart webservice |
2017-01-22 18:08:15 |
| PyVCF |
0.6.8 |
Variant Call Format (VCF) parser for Python |
2016-03-18 16:19:46 |