| Name | Version | Summary | date |
| genomicsdb |
0.0.9.17 |
Experimental Python Bindings for querying GenomicsDB |
2024-12-16 18:43:48 |
| pykmertools |
0.1.5 |
kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics. |
2024-12-13 14:11:46 |
| GPatch |
0.3.5 |
Assemble contigs into a chromosome-scalse pseudo-assembly using alignments to a reference sequence. |
2024-12-12 16:43:02 |
| pairtools |
1.1.2 |
CLI tools to process mapped Hi-C data |
2024-12-11 08:28:56 |
| cgat |
0.7.10 |
cgat : the Computational Genomics Analysis Toolkit |
2024-11-30 10:28:25 |
| omicidx |
1.13.3 |
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects. |
2024-11-15 22:40:50 |
| fastlmmclib |
0.0.7 |
Fast GWAS C library |
2024-11-02 23:27:42 |
| flippyr |
0.6.1 |
Find reference mismatches in PLINK filesets and fix them. |
2024-10-29 16:07:38 |
| bycon |
2.0.5 |
A Python-based environment for the Beacon v2 genomics API |
2024-10-28 01:26:38 |
| snpio |
1.1.4 |
Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment. |
2024-10-27 19:29:10 |
| anndash |
0.0.9 |
None |
2024-10-24 17:36:36 |
| pybbi |
0.4.1 |
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files. |
2024-10-18 15:58:26 |
| gene-thesaurus |
2.3.0 |
GeneThesaurus is a Python package that translates gene aliases and old gene symbols to the current HGNC standard gene symbols. |
2024-10-09 11:27:17 |
| umi-tools |
1.1.6 |
umi_tools: Tools for UMI analyses |
2024-10-03 10:17:36 |
| sphae |
1.4.5 |
Assembling pure culture phages from both Illumina and Nanopore sequencing technology |
2024-10-01 03:38:19 |
| geonomics |
1.4.6 |
A package for landscape genomic simulation |
2024-09-14 03:40:08 |
| spruceup |
2024.8.20.post1 |
A module for lexible identification, visualization, and removal of outliers from large multiple sequence alignments |
2024-08-20 23:28:07 |
| graphbin |
1.7.4 |
GraphBin: Refined binning of metagenomic contigs using assembly graphs. |
2024-08-19 05:31:45 |
| ymp |
0.3.1 |
Flexible multi-omic pipeline system |
2024-07-19 20:47:08 |
| plynk |
0.1.2 |
Easy command over the PLINK software directly from Python |
2024-07-06 21:01:19 |