| Name | Version | Summary | date |
| genome-mcp |
0.1.5 |
Genome Model Context Protocol (MCP) server for genomic data access |
2025-09-15 01:22:39 |
| mitywgs |
2.0.1 |
A sensitive Mitochondrial variant detection pipeline from WGS data |
2025-09-08 22:15:41 |
| prstools |
0.0.31 |
Convenient and powerfull Polygenic Risk Score creation. |
2025-09-08 22:12:24 |
| igvf-utils |
3.1.0 |
Client and tools for IGVF data submitters. |
2025-08-20 18:35:00 |
| evoaug2 |
2.0.3 |
Evolution-Inspired Data Augmentation for Genomic Sequences - DataLoader Version |
2025-08-19 19:59:17 |
| alphagenome |
0.2.0 |
A Python SDK for interacting and visualizing genomic models. |
2025-08-19 08:53:31 |
| gene-thesaurus |
3.1.0 |
GeneThesaurus is a Python package that translates gene aliases and old gene symbols to the current HGNC standard gene symbols. |
2025-08-12 14:31:52 |
| snpio |
1.6.0 |
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses. |
2025-07-25 08:41:06 |
| pegasuspy |
1.10.2 |
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells |
2025-03-27 19:06:48 |
| sphae |
1.4.6 |
Assembling pure culture phages from both Illumina and Nanopore sequencing technology |
2025-02-12 08:16:12 |
| rocco |
1.6.0.post1 |
Robust ATAC-seq Peak Calling for Many Samples via Convex Optimization |
2025-02-11 01:49:32 |
| GPatch |
0.3.6 |
Assemble contigs into a chromosome-scalse pseudo-assembly using alignments to a reference sequence. |
2025-01-07 20:49:05 |
| genomicsdb |
0.0.9.18 |
Experimental Python Bindings for querying GenomicsDB |
2024-12-19 20:41:33 |
| pykmertools |
0.1.5 |
kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics. |
2024-12-13 14:11:46 |
| pairtools |
1.1.2 |
CLI tools to process mapped Hi-C data |
2024-12-11 08:28:56 |
| cgat |
0.7.10 |
cgat : the Computational Genomics Analysis Toolkit |
2024-11-30 10:28:25 |
| omicidx |
1.13.3 |
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects. |
2024-11-15 22:40:50 |
| fastlmmclib |
0.0.7 |
Fast GWAS C library |
2024-11-02 23:27:42 |
| flippyr |
0.6.1 |
Find reference mismatches in PLINK filesets and fix them. |
2024-10-29 16:07:38 |
| bycon |
2.0.5 |
A Python-based environment for the Beacon v2 genomics API |
2024-10-28 01:26:38 |