genomicsdb


Namegenomicsdb JSON
Version 0.0.9.18 PyPI version JSON
download
home_pageNone
SummaryExperimental Python Bindings for querying GenomicsDB
upload_time2024-12-19 20:41:33
maintainerGenomicsDB.org
docs_urlNone
authorGenomicsDB.org
requires_python>=3.9
licenseMIT
keywords genomics genomicsdb variant vcf variant calls
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
[![pypi](https://img.shields.io/pypi/v/genomicsdb.svg)](https://pypi.org/project/genomicsdb/) 

# GenomicsDB-Python
Experimental Python 3 Bindings to the native [GenomicsDB](https://github.com/GenomicsDB/GenomicsDB) library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - `vcf2genomicsdb` or `gatk GenomicsDBImport`.

## Installation : Only Linux and MacOS are currently supported
Install `genomicsdb` binary wheels from PyPi with pip:
```
pip install genomicsdb
```

Or explicitly from a source distribution

```
# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install
```

## Development
See [instructions](https://github.com/GenomicsDB/GenomicsDB-Python/blob/master/INSTALL.md) for local builds and running tests.

            

Raw data

            {
    "_id": null,
    "home_page": null,
    "name": "genomicsdb",
    "maintainer": "GenomicsDB.org",
    "docs_url": null,
    "requires_python": ">=3.9",
    "maintainer_email": "support@genomicsdb.org",
    "keywords": "genomics, genomicsdb, variant, vcf, variant calls",
    "author": "GenomicsDB.org",
    "author_email": "support@genomicsdb.org",
    "download_url": null,
    "platform": null,
    "description": "[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)\n[![pypi](https://img.shields.io/pypi/v/genomicsdb.svg)](https://pypi.org/project/genomicsdb/) \n\n# GenomicsDB-Python\nExperimental Python 3 Bindings to the native [GenomicsDB](https://github.com/GenomicsDB/GenomicsDB) library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - `vcf2genomicsdb` or `gatk GenomicsDBImport`.\n\n## Installation : Only Linux and MacOS are currently supported\nInstall `genomicsdb` binary wheels from PyPi with pip:\n```\npip install genomicsdb\n```\n\nOr explicitly from a source distribution\n\n```\n# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz\ntar xvf genomicsdb.source.tar.gz\ncd genomicsdb-<version>\npython setup.py install\n```\n\n## Development\nSee [instructions](https://github.com/GenomicsDB/GenomicsDB-Python/blob/master/INSTALL.md) for local builds and running tests.\n",
    "bugtrack_url": null,
    "license": "MIT",
    "summary": "Experimental Python Bindings for querying GenomicsDB",
    "version": "0.0.9.18",
    "project_urls": null,
    "split_keywords": [
        "genomics",
        " genomicsdb",
        " variant",
        " vcf",
        " variant calls"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "6d5249ee9ac2c41a208122d4ac489ecd7f06f500e176b5031dbc0c3fe91f2fee",
                "md5": "b9ca7f4748fd7d741ca6220c910ac82c",
                "sha256": "b7803f6f6ec2450abd354633aa10ba67405505c13a9254a7a15bce58aa6192b0"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp310-cp310-macosx_12_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "b9ca7f4748fd7d741ca6220c910ac82c",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": ">=3.9",
            "size": 5775470,
            "upload_time": "2024-12-19T20:41:33",
            "upload_time_iso_8601": "2024-12-19T20:41:33.738615Z",
            "url": "https://files.pythonhosted.org/packages/6d/52/49ee9ac2c41a208122d4ac489ecd7f06f500e176b5031dbc0c3fe91f2fee/genomicsdb-0.0.9.18-cp310-cp310-macosx_12_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "7f32fbd7b30640521782bbed3af8d32ca68f73434c0d7099f74cdebb82371e0d",
                "md5": "54fdc2806b393572cc7796714001ab6b",
                "sha256": "1815b24e8f91c386e9bbe52f9c72eaf1d221dcae5f54e08e02456703d95a73f7"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp310-cp310-macosx_12_0_x86_64.whl",
            "has_sig": false,
            "md5_digest": "54fdc2806b393572cc7796714001ab6b",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": ">=3.9",
            "size": 6458979,
            "upload_time": "2024-12-19T20:41:38",
            "upload_time_iso_8601": "2024-12-19T20:41:38.742647Z",
            "url": "https://files.pythonhosted.org/packages/7f/32/fbd7b30640521782bbed3af8d32ca68f73434c0d7099f74cdebb82371e0d/genomicsdb-0.0.9.18-cp310-cp310-macosx_12_0_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "c82bf8add4ed01784d6acd983bfac1a6d2b6c4ed9c1e1325bfe3afbde7792189",
                "md5": "ff2ff16ee3ec59b448299b49dbfe7f4c",
                "sha256": "296c8ecf6de96a16dd8ab5ad4fbd5e1dd6d06075cdcb86ad17d5887cd3d788a9"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "ff2ff16ee3ec59b448299b49dbfe7f4c",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": ">=3.9",
            "size": 8961079,
            "upload_time": "2024-12-19T20:41:41",
            "upload_time_iso_8601": "2024-12-19T20:41:41.668745Z",
            "url": "https://files.pythonhosted.org/packages/c8/2b/f8add4ed01784d6acd983bfac1a6d2b6c4ed9c1e1325bfe3afbde7792189/genomicsdb-0.0.9.18-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "b9fdf883898b9fe3c97c09288f4a18c125392d61fa3cc7a6a15a59379c7cd0a4",
                "md5": "498cc44e8046e7f5ff3c1054be5780e2",
                "sha256": "dc1881af363aab66453aab0cb8856cc55415342524129e0889e56c9f13ee508f"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp311-cp311-macosx_12_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "498cc44e8046e7f5ff3c1054be5780e2",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": ">=3.9",
            "size": 5773377,
            "upload_time": "2024-12-19T20:41:46",
            "upload_time_iso_8601": "2024-12-19T20:41:46.616595Z",
            "url": "https://files.pythonhosted.org/packages/b9/fd/f883898b9fe3c97c09288f4a18c125392d61fa3cc7a6a15a59379c7cd0a4/genomicsdb-0.0.9.18-cp311-cp311-macosx_12_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "7695f987e91047a410cf630f428b23da9b270685e8763df0805fe021c00f7f19",
                "md5": "6c918b236f2280aff5e4955d633415f0",
                "sha256": "cf965201a38176bcb51a97d3aee82dcf4d0c7a7c6e7663cecadc13ad069c2786"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp311-cp311-macosx_12_0_x86_64.whl",
            "has_sig": false,
            "md5_digest": "6c918b236f2280aff5e4955d633415f0",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": ">=3.9",
            "size": 6457075,
            "upload_time": "2024-12-19T20:41:48",
            "upload_time_iso_8601": "2024-12-19T20:41:48.894044Z",
            "url": "https://files.pythonhosted.org/packages/76/95/f987e91047a410cf630f428b23da9b270685e8763df0805fe021c00f7f19/genomicsdb-0.0.9.18-cp311-cp311-macosx_12_0_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "2ccfd05b0421ae6312437ce16f16ccc2c05d3b1a224ee64a7fc955fb5775a351",
                "md5": "7eab623eda9b20bc8ae3bc2605c85edc",
                "sha256": "14a14ab51f3c876d200ad656e310dd1a8894295ee41f2186c91b67ece60c91b4"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "7eab623eda9b20bc8ae3bc2605c85edc",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": ">=3.9",
            "size": 8958736,
            "upload_time": "2024-12-19T20:41:52",
            "upload_time_iso_8601": "2024-12-19T20:41:52.469257Z",
            "url": "https://files.pythonhosted.org/packages/2c/cf/d05b0421ae6312437ce16f16ccc2c05d3b1a224ee64a7fc955fb5775a351/genomicsdb-0.0.9.18-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "6ce1ded0793c8538e40dbb87ef4d9b3d61535ba452b7247bdfde3080a215faed",
                "md5": "6e319ee4ea1009206fa2a6da836d5ff4",
                "sha256": "3ce0a25cbf9cfff8be05e2d55d04a46aad2b411855556c956c2b7e0c87f3fe29"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp312-cp312-macosx_12_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "6e319ee4ea1009206fa2a6da836d5ff4",
            "packagetype": "bdist_wheel",
            "python_version": "cp312",
            "requires_python": ">=3.9",
            "size": 5782653,
            "upload_time": "2024-12-19T20:41:55",
            "upload_time_iso_8601": "2024-12-19T20:41:55.216517Z",
            "url": "https://files.pythonhosted.org/packages/6c/e1/ded0793c8538e40dbb87ef4d9b3d61535ba452b7247bdfde3080a215faed/genomicsdb-0.0.9.18-cp312-cp312-macosx_12_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "5549da3e9326986d25ecd646e64f46f4f8868d7aea9f3bb34554047fdd0825cf",
                "md5": "857d632b6f99ff14d11388855a916358",
                "sha256": "23dfe108c7349615e422d4d8cae10b70f76e67e38796c084c7e55b68a8686d4b"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp312-cp312-macosx_12_0_x86_64.whl",
            "has_sig": false,
            "md5_digest": "857d632b6f99ff14d11388855a916358",
            "packagetype": "bdist_wheel",
            "python_version": "cp312",
            "requires_python": ">=3.9",
            "size": 6465825,
            "upload_time": "2024-12-19T20:41:58",
            "upload_time_iso_8601": "2024-12-19T20:41:58.830866Z",
            "url": "https://files.pythonhosted.org/packages/55/49/da3e9326986d25ecd646e64f46f4f8868d7aea9f3bb34554047fdd0825cf/genomicsdb-0.0.9.18-cp312-cp312-macosx_12_0_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "b2e7fef82d5442dcf92b2a8d5420ca9de59e557af5ffd82ed651650c013204f0",
                "md5": "eefa5dd5e401732cb999af23697b04be",
                "sha256": "0db206fce6eb3d1ac96b988f178cc71281d5d1372a8bd7adb1d766fad21d4492"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "eefa5dd5e401732cb999af23697b04be",
            "packagetype": "bdist_wheel",
            "python_version": "cp312",
            "requires_python": ">=3.9",
            "size": 8968534,
            "upload_time": "2024-12-19T20:42:04",
            "upload_time_iso_8601": "2024-12-19T20:42:04.668979Z",
            "url": "https://files.pythonhosted.org/packages/b2/e7/fef82d5442dcf92b2a8d5420ca9de59e557af5ffd82ed651650c013204f0/genomicsdb-0.0.9.18-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "08f890fd56935d28a5265f0a34b65c76d5786a4bb6f38c7c919edefbfbe69bf5",
                "md5": "dcb135f3f57eeb6f7da52159f7876dfe",
                "sha256": "925ea109d0b4a06214be76e1723fa03e19dc1bd15badb26784ccabeb42b08be5"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp39-cp39-macosx_12_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "dcb135f3f57eeb6f7da52159f7876dfe",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": ">=3.9",
            "size": 5775515,
            "upload_time": "2024-12-19T20:42:07",
            "upload_time_iso_8601": "2024-12-19T20:42:07.426109Z",
            "url": "https://files.pythonhosted.org/packages/08/f8/90fd56935d28a5265f0a34b65c76d5786a4bb6f38c7c919edefbfbe69bf5/genomicsdb-0.0.9.18-cp39-cp39-macosx_12_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "2a4f5f9a4a97512240137c09b9f368c6c38bfa3eb4f0594089441ab7df9d4855",
                "md5": "7be75414a0d42e6cffa6cac1284213af",
                "sha256": "6d0ebdbc6e3afefa3fa1a24bf24483e9d05ee0b280ebaed08b3e3e8aeb2a3198"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp39-cp39-macosx_12_0_x86_64.whl",
            "has_sig": false,
            "md5_digest": "7be75414a0d42e6cffa6cac1284213af",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": ">=3.9",
            "size": 6459020,
            "upload_time": "2024-12-19T20:42:09",
            "upload_time_iso_8601": "2024-12-19T20:42:09.453572Z",
            "url": "https://files.pythonhosted.org/packages/2a/4f/5f9a4a97512240137c09b9f368c6c38bfa3eb4f0594089441ab7df9d4855/genomicsdb-0.0.9.18-cp39-cp39-macosx_12_0_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "f0c60963a050117a26c0a223fb3a90922849919d883bc5a465863a62bde9cffa",
                "md5": "d35a7de2e806b7a770fdc06ed38cd422",
                "sha256": "7894a9d4e6b9badf6f6948ebc76a89fdedeeebc3265adf2f7315a20dc2e285c0"
            },
            "downloads": -1,
            "filename": "genomicsdb-0.0.9.18-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "d35a7de2e806b7a770fdc06ed38cd422",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": ">=3.9",
            "size": 8961088,
            "upload_time": "2024-12-19T20:42:11",
            "upload_time_iso_8601": "2024-12-19T20:42:11.834748Z",
            "url": "https://files.pythonhosted.org/packages/f0/c6/0963a050117a26c0a223fb3a90922849919d883bc5a465863a62bde9cffa/genomicsdb-0.0.9.18-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-12-19 20:41:33",
    "github": false,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "lcname": "genomicsdb"
}
        
Elapsed time: 0.43591s