| Name | Version | Summary | date |
| omicidx |
1.11.4 |
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects. |
2024-05-29 17:53:08 |
| fastqwiper |
2024.1.93 |
An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and fix reads interleaving |
2024-05-26 07:23:00 |
| geonomics |
1.4.3 |
A package for landscape genomic simulation |
2024-05-24 04:12:27 |
| hAMRonization |
1.1.7 |
Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification |
2024-05-21 21:13:04 |
| sphae |
1.4.1 |
Assembling pure culture phages from both Illumina and Nanopore sequencing technology |
2024-05-20 01:16:36 |
| blasttools |
0.1.16 |
Commands for turning blast queries into pandas dataframes. |
2024-05-14 10:29:32 |
| genomicsdb |
0.0.9.12 |
Experimental Python Bindings for querying GenomicsDB |
2024-05-07 23:51:33 |
| seqlogo |
5.29.9 |
Python port of the R Bioconductor `seqlogo` package |
2024-05-03 14:16:10 |
| fastlmm |
0.6.8 |
Fast GWAS |
2024-04-30 21:10:39 |
| pairtools |
1.1.0 |
CLI tools to process mapped Hi-C data |
2024-04-23 19:21:37 |
| cooltools |
0.7.0 |
Analysis tools for genomic interaction data stored in .cool format |
2024-04-22 18:42:06 |
| pybbi |
0.4.0 |
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files. |
2024-04-14 11:55:51 |
| hiscanner |
0.2a0 |
High-resolution copy number variant calling in single-cell whole-genome sequencing. |
2024-04-11 15:38:05 |
| cgat |
0.7.2 |
cgat : the Computational Genomics Analysis Toolkit |
2024-04-05 10:31:20 |
| bycon |
1.6.5 |
A Python-based environment for the Beacon v2 genomics API |
2024-04-03 07:16:53 |
| cgatcore |
0.6.16 |
cgatcore : the Computational Genomics Analysis Toolkit |
2024-04-02 07:28:45 |
| sevenbridges-python |
2.11.0 |
SBG API python client bindings |
2024-03-18 15:19:29 |
| SuperPang |
1.3.0 |
Non-redundant pangenome assemblies from multiple genomes or bins |
2024-03-18 11:34:41 |
| pegasuspy |
1.9.1.post1 |
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells |
2024-03-16 08:16:11 |
| neosv |
0.0.4 |
Neoantigens from Structural Variations |
2024-03-15 08:39:27 |