| Name | Version | Summary | date |
| snpio |
1.5.15 |
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses. |
2025-07-08 18:51:28 |
| sphae |
1.4.6 |
Assembling pure culture phages from both Illumina and Nanopore sequencing technology |
2025-02-12 08:16:12 |
| rocco |
1.6.0.post1 |
Robust ATAC-seq Peak Calling for Many Samples via Convex Optimization |
2025-02-11 01:49:32 |
| consenrich |
0.1.0b2 |
Genome-wide extraction of reproducible continuous-valued signals hidden in noisy multisample functional genomics data |
2025-02-04 18:25:36 |
| GPatch |
0.3.6 |
Assemble contigs into a chromosome-scalse pseudo-assembly using alignments to a reference sequence. |
2025-01-07 20:49:05 |
| genomicsdb |
0.0.9.18 |
Experimental Python Bindings for querying GenomicsDB |
2024-12-19 20:41:33 |
| pykmertools |
0.1.5 |
kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics. |
2024-12-13 14:11:46 |
| pairtools |
1.1.2 |
CLI tools to process mapped Hi-C data |
2024-12-11 08:28:56 |
| cgat |
0.7.10 |
cgat : the Computational Genomics Analysis Toolkit |
2024-11-30 10:28:25 |
| omicidx |
1.13.3 |
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects. |
2024-11-15 22:40:50 |
| fastlmmclib |
0.0.7 |
Fast GWAS C library |
2024-11-02 23:27:42 |
| flippyr |
0.6.1 |
Find reference mismatches in PLINK filesets and fix them. |
2024-10-29 16:07:38 |
| bycon |
2.0.5 |
A Python-based environment for the Beacon v2 genomics API |
2024-10-28 01:26:38 |
| anndash |
0.0.9 |
None |
2024-10-24 17:36:36 |
| pybbi |
0.4.1 |
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files. |
2024-10-18 15:58:26 |
| gene-thesaurus |
2.3.0 |
GeneThesaurus is a Python package that translates gene aliases and old gene symbols to the current HGNC standard gene symbols. |
2024-10-09 11:27:17 |
| umi-tools |
1.1.6 |
umi_tools: Tools for UMI analyses |
2024-10-03 10:17:36 |
| geonomics |
1.4.6 |
A package for landscape genomic simulation |
2024-09-14 03:40:08 |
| spruceup |
2024.8.20.post1 |
A module for lexible identification, visualization, and removal of outliers from large multiple sequence alignments |
2024-08-20 23:28:07 |
| graphbin |
1.7.4 |
GraphBin: Refined binning of metagenomic contigs using assembly graphs. |
2024-08-19 05:31:45 |