Name | Version | Summary | date |
peakachu |
2.3 |
A supervised learning framework for chromatin loop detection in genome-wide contact maps. |
2024-03-23 11:21:06 |
phic |
2.0.13 |
Polymer dynamics deciphered from Hi-C data |
2024-02-09 09:18:30 |
HiCShuffle |
1.1.2 |
FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis |
2023-12-08 21:50:32 |
pairtools |
1.0.3 |
CLI tools to process mapped Hi-C data |
2023-11-20 19:32:48 |
hisv |
1.0.9 |
A computational pipeline for structural variation detection from Hi-C data |
2023-11-18 10:11:25 |
hic2cool |
1.0.1 |
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion. |
2023-11-14 21:35:42 |
cooltools |
0.6.1 |
Analysis tools for genomic interaction data stored in .cool format |
2023-11-08 14:57:36 |
cooler |
0.9.3 |
Sparse binary format for genomic interaction matrices. |
2023-09-11 22:57:23 |
hicpeaks |
0.3.7 |
A Python implementation for BH-FDR and HiCCUPS |
2023-08-14 04:09:49 |
neoloop |
0.4.3.post2 |
Predict neo-loops induced by structural variations |
2023-03-13 01:36:29 |
runHiC |
0.8.7 |
A easy-to-use Hi-C processing software supporting distributed computation |
2023-01-19 06:20:01 |
HiCLift |
1.0 |
Convert genomic coordinates of contact pairs from one assembly to another. |
2023-01-17 15:14:49 |
pypairix |
0.3.7 |
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md. |
2019-04-11 16:03:21 |