PyDigger - unearthing stuff about Python


NameVersionSummarydate
peakachu 2.3 A supervised learning framework for chromatin loop detection in genome-wide contact maps. 2024-03-23 11:21:06
phic 2.0.13 Polymer dynamics deciphered from Hi-C data 2024-02-09 09:18:30
HiCShuffle 1.1.2 FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis 2023-12-08 21:50:32
pairtools 1.0.3 CLI tools to process mapped Hi-C data 2023-11-20 19:32:48
hisv 1.0.9 A computational pipeline for structural variation detection from Hi-C data 2023-11-18 10:11:25
hic2cool 1.0.1 Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion. 2023-11-14 21:35:42
cooltools 0.6.1 Analysis tools for genomic interaction data stored in .cool format 2023-11-08 14:57:36
cooler 0.9.3 Sparse binary format for genomic interaction matrices. 2023-09-11 22:57:23
hicpeaks 0.3.7 A Python implementation for BH-FDR and HiCCUPS 2023-08-14 04:09:49
neoloop 0.4.3.post2 Predict neo-loops induced by structural variations 2023-03-13 01:36:29
runHiC 0.8.7 A easy-to-use Hi-C processing software supporting distributed computation 2023-01-19 06:20:01
HiCLift 1.0 Convert genomic coordinates of contact pairs from one assembly to another. 2023-01-17 15:14:49
pypairix 0.3.7 Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md. 2019-04-11 16:03:21
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