| Name | Version | Summary | date |
| runHiC |
0.9.0 |
A easy-to-use Hi-C processing software supporting distributed computation |
2024-11-21 02:25:08 |
| hicpeaks |
0.3.8 |
A Python implementation for BH-FDR and HiCCUPS |
2024-11-21 02:21:27 |
| DeCGR |
1.1.18 |
An interactive toolkit for deciphering CGRs from Hi-C data |
2024-11-05 08:50:36 |
| stripepy-hic |
1.0.2 |
A stripe recognition tool developed by Paulsen Group @University of Oslo |
2024-09-25 09:26:04 |
| parasplit |
1.1.2 |
An Hi-C tool for cutting sequences using specified enzymes |
2024-07-19 08:26:02 |
| cooler |
0.10.2 |
Sparse binary format for genomic interaction matrices. |
2024-06-17 20:09:37 |
| peakachu |
2.3 |
A supervised learning framework for chromatin loop detection in genome-wide contact maps. |
2024-03-23 11:21:06 |
| phic |
2.0.13 |
Polymer dynamics deciphered from Hi-C data |
2024-02-09 09:18:30 |
| HiCShuffle |
1.1.2 |
FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis |
2023-12-08 21:50:32 |
| hisv |
1.0.9 |
A computational pipeline for structural variation detection from Hi-C data |
2023-11-18 10:11:25 |
| hic2cool |
1.0.1 |
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion. |
2023-11-14 21:35:42 |
| neoloop |
0.4.3.post2 |
Predict neo-loops induced by structural variations |
2023-03-13 01:36:29 |
| HiCLift |
1.0 |
Convert genomic coordinates of contact pairs from one assembly to another. |
2023-01-17 15:14:49 |
| hic-straw |
1.3.1 |
Straw bound with pybind11 |
2022-05-27 22:31:04 |
| pypairix |
0.3.7 |
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md. |
2019-04-11 16:03:21 |