| Name | Version | Summary | date |
| pacu-snp |
0.0.6 |
Workflow for whole genome sequencing based phylogeny of Illumina and ONT data. |
2024-11-13 13:54:10 |
| baltic |
0.3.0 |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees |
2024-09-27 10:50:14 |
| sonicparanoid |
2.0.8 |
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models |
2024-08-07 07:20:26 |
| toytree |
3.0.4 |
tree manipulation, plotting, and evolutionary analysis library |
2024-07-22 16:15:32 |
| DendroPy |
5.0.1 |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
2024-06-02 07:40:15 |
| gene-connector-cli |
0.6.5 |
The Gene-Connector command line interface |
2023-12-10 15:18:46 |
| transcriptorthology |
3.0.2 |
Algorithm to address Orthology and Paralogy at the Transcript Level |
2023-12-02 02:44:05 |
| mach2 |
0.0.3 |
Migration Analysis of Clonal History 2 |
2023-05-26 03:08:32 |
| paleomix |
1.3.8 |
Bioinformatics pipelines for HTS data |
2023-05-19 18:30:26 |
| DendroPy-calver |
2023.330.2 |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. Calendar-versioned fork tracking DendroPy main branch. |
2023-03-30 06:22:01 |
| viro-seq-utils |
1.3.4 |
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory. |
2021-04-14 12:28:56 |
| ete3 |
3.1.2 |
A Python Environment for (phylogenetic) Tree Exploration |
2020-08-30 07:14:34 |
| alfpy |
1.0.6 |
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics). |
2018-03-13 07:04:44 |