gene-connector-cli


Namegene-connector-cli JSON
Version 0.6.5 PyPI version JSON
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SummaryThe Gene-Connector command line interface
upload_time2023-12-10 15:18:46
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docs_urlNone
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requires_python>=3.11
license
keywords dna bioinformatics phylogeny genomics genetics
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            # Gene Connector (gcon)

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Genbank currently stands as one of the most significant global repositories of genetic information. Nevertheless, it is not always easy to find the information we need in the format we need. Gene Connector (gcon) is a command line interface (CLI) tool that aims to facilitate the metadata extraction from nucleotide records from Entrez Genbank API's. It is a tool that can be used by researchers, students and anyone interested in genetic associated metadata information.

[![Licence](https://img.shields.io/pypi/l/gene-connector-cli?style=for-the-badge)](LICENSE)
[![Github Version](https://img.shields.io/github/v/tag/sgelias/gene-connector-cli?style=for-the-badge)](pyproject.toml)
[![PyPI Version](https://img.shields.io/pypi/v/gene-connector-cli?style=for-the-badge)](pyproject.toml)

___

See [project source code](https://github.com/sgelias/gene-connector-cli) for details.

See [documentation](https://github.com/sgelias/gene-connector-cli/blob/main/docs/README.md) for details.

___

## Installation โš™๏ธ

Recommended installation is using `pip`. However alternative installations are also possible. See [installation guide](https://github.com/sgelias/gene-connector-cli/blob/main/docs/book/01_installation.md) for details.

## Usage ๐Ÿ‘จ๐Ÿฝโ€๐Ÿ’ป

Gene Connector is a command line interface (CLI) tool, them main command being `gcon`, available after installation. See [usage guide](https://github.com/sgelias/gene-connector-cli/blob/main/docs/book/02_usage.md) for details.

## Project Architecture and Structure ๐Ÿ›๏ธ

See [project structure](https://github.com/sgelias/gene-connector-cli/blob/main/docs/book/03_project_structure.md) for details.

## Data Modelling ๐Ÿ—๏ธ

See [data modelling](https://github.com/sgelias/gene-connector-cli/blob/main/docs/book/04_data_modelling.md) for details.

            

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