PyDigger - unearthing stuff about Python


NameVersionSummarydate
BioProt 0.2.0 A package for DNA, RNA and protein sequence manipulation 2024-05-17 11:34:12
pypdb 2.4 A Python wrapper for the RCSB Protein Data Bank (PDB) API 2024-05-15 13:54:46
progres 0.2.3 Fast protein structure searching using structure graph embeddings 2024-05-02 11:39:45
protkit 0.2.4 A unified toolkit for structural protein engineering. 2024-04-23 13:52:20
stringx 0.7.5 STRING DB API Client 2024-04-09 23:40:39
mDeepFRI 1.1.5 Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. 2024-04-01 22:24:07
sadic 2.0.0 Reimplementation as a python package of the software for Simple Atom Depth Index Calculator (SADIC) 2024-03-25 14:12:51
cazy-webscraper 2.3.0.3 A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly interrogating the data. Also, automate retrieving protein data, sequences, EC numbers and structure files for specific datasets in the CAZyme database from UniProt, GenBank and PDB. 2024-03-25 08:45:28
pixelgen-pixelator 0.16.2 A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays. 2024-03-19 12:35:30
gradio-molecule3d 0.0.5 Molecule3D custom component to visualize pdb or sdf files using 3Dmol.js 2024-03-16 19:31:50
py3Dmol 2.1.0 An IPython interface for embedding 3Dmol.js views in Jupyter notebooks 2024-03-12 12:28:02
apalib 0.1.0 2024-03-06 21:31:04
proteinflow 2.8.0 Versatile pipeline for processing protein structure data for deep learning applications. 2024-02-08 09:49:55
pdbe-arpeggio 1.4.4 Arpeggio calculates interatomic contacts based on the rules defined in CREDO. 2024-01-24 13:16:16
py-packman 1.4.12 A software package for molecular PACKing and Motion ANalysis (PACKMAN) 2024-01-19 07:25:54
protmapper 0.0.29 Map protein sites to human reference sequence. 2024-01-19 04:49:14
icn3dpy 3.29.0 An IPython interface for embedding iCn3D viewer 2024-01-11 18:37:13
prospr 1.2.1 A toolbox for protein folding with Python. 2024-01-03 10:26:55
rpg 2.0.3 In silico protein digestion 2023-12-18 09:09:22
gauche 0.1.6 Gaussian Process Library for Molecules, Chemical Reactions and Proteins. 2023-12-11 00:36:18
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