| Name | Version | Summary | date |
| scarf |
0.30.0 |
Scarf: A scalable tool for single-cell omics data analysis |
2024-12-17 23:59:22 |
| snapatac2 |
2.8.0 |
SnapATAC2: Single-cell epigenomics analysis pipeline |
2024-12-13 15:35:06 |
| RaichuNorm |
1.0 |
A cross-platform method for chromatin contact normalization |
2024-12-12 02:09:44 |
| scimilarity |
0.3.0 |
Single cell embedding into latent space and retrieving with kNN. |
2024-11-19 21:46:14 |
| snapatac2-scooby |
1.0.0 |
SnapATAC2-scooby: Single-cell epigenomics analysis pipeline with functionality for RNA-seq processing |
2024-11-15 15:37:56 |
| starfish |
0.3.1 |
Pipelines and pipeline components for the analysis of image-based transcriptomics data |
2024-11-14 19:12:29 |
| dogma-data |
0.2.19 |
Data processing for Dogma |
2024-11-04 21:48:10 |
| scDiffusion |
0.3.1 |
scDiffusion(Single-Cell graph neural Diffusion) is a physics-informed graph generative model to do scRNA-seq analysis. scDiffusion investigates cellular dynamics utilizing an attention-based neural network. |
2024-11-01 20:04:20 |
| cellrank |
2.0.6 |
CellRank: dynamics from multi-view single-cell data |
2024-09-15 17:23:38 |
| biostarling |
0.1.4 |
Segmentation error aware clustering single-cell spatial expression data |
2024-08-16 14:34:25 |
| moscot |
0.3.5 |
Multi-omic single-cell optimal transport tools |
2024-08-02 08:50:37 |
| scripro |
1.1.30 |
Single-cell gene regulation network inference by large-scale data integration Pro |
2024-06-05 16:54:40 |
| demuxEM |
0.1.7.post1 |
demuxEM is the demultiplexing module of Pegasus |
2024-03-15 19:36:19 |
| mitea-hires |
0.0.18 |
Infer single-cell and spatial microRNA activity from transcriptomics data |
2024-02-27 16:30:16 |
| SCMeTA |
0.2.6 |
A python package for single-cell metabolism analysis. |
2024-02-26 08:24:31 |
| uce-model |
0.1.4 |
Universal Cell Embedding model for single-cell RNA-seq data |
2024-02-19 22:59:36 |
| cellsnake |
0.2.0.12 |
cellsnake |
2024-02-18 12:07:06 |
| scmail |
1.0.9 |
sc-MAIL: single-cell Maximum-likelihood Ancestral Inference for Lineage-tracing |
2024-01-31 19:29:25 |
| cg-gnn |
0.3.2 |
Train a graph neural network on cell graphs. |
2024-01-18 22:38:40 |
| harmony-pytorch |
0.1.8 |
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration |
2024-01-07 21:36:56 |