| Name | Version | Summary | date |
| easydecon |
0.1.2 |
easydecon |
2025-10-20 12:26:32 |
| scxpand |
0.1.58 |
Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing |
2025-09-13 17:46:19 |
| scxpand-cuda |
0.1.58 |
Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing (CUDA-enabled) |
2025-09-13 17:46:15 |
| fadvi |
0.1.0.post1 |
Factor Disentanglement Variational Inference for single-cell batch integration |
2025-09-12 21:32:57 |
| cruise-toolkit |
0.1.1 |
Unified CLI wrapper for barcode/UMI & CR/UR tools |
2025-09-11 03:31:14 |
| scpair |
0.1.0 |
scPair: boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases |
2025-09-08 04:30:09 |
| treetag |
0.1.1 |
Hierarchical cell-type tagging with YAML ontologies and markers. |
2025-09-06 21:32:48 |
| soupx-python |
0.3.0 |
Python implementation of SoupX for removing ambient RNA contamination from droplet-based single-cell RNA sequencing data |
2025-09-03 13:40:48 |
| cellproportion |
1.1.0 |
Cell type proportion analysis for single-cell and spatial transcriptomics data |
2025-08-29 14:37:07 |
| hto |
1.1.1 |
A method to demultiplex hashtagged single-cell data. |
2025-08-29 01:56:30 |
| scportrait |
1.4.0 |
Computational framework to generate single cell datasets from raw microscopy images. |
2025-08-22 17:16:32 |
| scBond |
1.0 |
A single-cell cross-modality translation method specifically between RNA data and DNA methylation data. |
2025-08-20 08:34:30 |
| ragulate-bio |
0.1.1 |
Retrieval augmented validation for TF inference in single cell biology |
2025-08-19 21:26:39 |
| heartmap |
1.1.1 |
Heart Multi-chamber Analysis Platform for single-cell RNA-seq |
2025-08-06 19:39:24 |
| celldiffusion |
0.1.2 |
CellDiffusion(Single-Cell graph neural Diffusion) is a physics-informed graph generative model to do scRNA-seq analysis. CellDiffusion investigates cellular dynamics utilizing an attention-based neural network. |
2025-07-27 03:51:56 |
| CellDiffusion |
0.1 |
CellDiffusion(Single-Cell graph neural Diffusion) is a physics-informed graph generative model to do scRNA-seq analysis. CellDiffusion investigates cellular dynamics utilizing an attention-based neural network. |
2025-07-25 04:24:46 |
| feasc |
1.1.4 |
Framework of Analysis for Single Cells |
2025-07-16 12:27:29 |
| scarf |
0.31.1 |
Scarf: A scalable tool for single-cell omics data analysis |
2025-01-20 17:43:59 |
| snapatac2 |
2.8.0 |
SnapATAC2: Single-cell epigenomics analysis pipeline |
2024-12-13 15:35:06 |
| RaichuNorm |
1.0 |
A cross-platform method for chromatin contact normalization |
2024-12-12 02:09:44 |