arnie


Namearnie JSON
Version 0.2.4 PyPI version JSON
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home_pageNone
SummaryA Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
upload_time2025-02-01 01:12:37
maintainerNone
docs_urlNone
authorNone
requires_python>=3.7
licenseNone
keywords rna rna structure prediction bioinformatics
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requirements No requirements were recorded.
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            # arnie
Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.

## Documentation
[See our full docs.](https://daslab.github.io/arnie)

## Install
`arnie` is [available on PyPI](https://pypi.org/project/arnie/).

`pip install arnie`

## Repo Organization

`src/arnie`: source code for the arnie package.

`docs`: docsify-based markdown documentation for the arnie package.

`tests`: unit tests 

`notebooks`: example jupyter notebooks with usage.

`scripts`: scripts for processing sequences in batch.

`parameter_files`: dir of various parameter files for packages, put here out of convenience.


(c) 2024 Leland Stanford Jr University
Authors:
Hannah Wayment-Steele

            

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