Name | arnie JSON |
Version |
0.2.4
JSON |
| download |
home_page | None |
Summary | A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms. |
upload_time | 2025-02-01 01:12:37 |
maintainer | None |
docs_url | None |
author | None |
requires_python | >=3.7 |
license | None |
keywords |
rna
rna structure prediction
bioinformatics
|
VCS |
 |
bugtrack_url |
|
requirements |
No requirements were recorded.
|
Travis-CI |
No Travis.
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coveralls test coverage |
No coveralls.
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# arnie
Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.
## Documentation
[See our full docs.](https://daslab.github.io/arnie)
## Install
`arnie` is [available on PyPI](https://pypi.org/project/arnie/).
`pip install arnie`
## Repo Organization
`src/arnie`: source code for the arnie package.
`docs`: docsify-based markdown documentation for the arnie package.
`tests`: unit tests
`notebooks`: example jupyter notebooks with usage.
`scripts`: scripts for processing sequences in batch.
`parameter_files`: dir of various parameter files for packages, put here out of convenience.
(c) 2024 Leland Stanford Jr University
Authors:
Hannah Wayment-Steele
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