| Name | Version | Summary | date |
| MirMachine |
0.3.0.2 |
MirMachine |
2025-10-20 22:37:42 |
| pyfurnace |
1.0.3 |
An integrated design engine for RNA origami |
2025-10-18 00:38:28 |
| rnapy |
3.2.2 |
Unified RNA Analysis Toolkit - ML-powered RNA sequence analysis and structure prediction |
2025-10-14 01:07:22 |
| BPfold |
0.2.8 |
Deep generalizable prediction of RNA secondary structure via base pair motif energy. |
2025-09-14 19:46:59 |
| deeprm |
1.0.4 |
DeepRM: Deep Learning for RNA Modification Detection using Nanopore Direct RNA Sequencing |
2025-09-13 02:28:45 |
| scBond |
1.0 |
A single-cell cross-modality translation method specifically between RNA data and DNA methylation data. |
2025-08-20 08:34:30 |
| rnaglib |
3.4.7 |
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations |
2025-07-08 21:15:30 |
| arnie |
0.2.4 |
A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms. |
2025-02-01 01:12:37 |
| trxtools |
0.3.0 |
Python tools facilitating bioinformatic analysis of nascent transcripts and transcriptomic data. |
2025-01-10 22:52:52 |
| scvelo |
0.3.3 |
RNA velocity generalized through dynamical modeling |
2024-12-09 07:51:43 |
| BioProt |
0.2.0 |
A package for DNA, RNA and protein sequence manipulation |
2024-05-17 11:34:12 |
| ifpd2q |
1.0.4 |
An iFISH probe design pipeline (II) |
2024-02-29 17:20:17 |
| cellsnake |
0.2.0.12 |
cellsnake |
2024-02-18 12:07:06 |
| rnaseeker |
1.0.0 |
RNA-seq scripts and libraries |
2024-01-29 04:13:12 |
| CPAT |
3.0.5 |
CPAT (Coding Potential Assessment Tool). |
2024-01-25 18:17:16 |
| linearpartition-unofficial |
0.2 |
Python interface to LinearPartition, a linear-time RNA secondary structure prediction tool |
2024-01-20 07:13:18 |
| promotercalculator |
1.2.2 |
Salis Lab's promoter-calculator (Barrick Lab Fork) |
2023-12-18 21:14:48 |
| topicvelo |
0.0.2 |
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems |
2023-12-12 22:54:16 |
| deepprotein |
0.0.0 |
General Framework for Deep Learning on Macro Molecules |
2023-12-01 08:32:05 |
| RnaBench |
0.1.2 |
RNA benchmarking tools and utilities. |
2023-10-31 14:29:05 |