| Name | Version | Summary | date |
| rnaglib |
3.0.4 |
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations |
2024-12-12 02:02:20 |
| scvelo |
0.3.3 |
RNA velocity generalized through dynamical modeling |
2024-12-09 07:51:43 |
| arnie |
0.2.1 |
A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms. |
2024-10-28 22:08:25 |
| BioProt |
0.2.0 |
A package for DNA, RNA and protein sequence manipulation |
2024-05-17 11:34:12 |
| ifpd2q |
1.0.4 |
An iFISH probe design pipeline (II) |
2024-02-29 17:20:17 |
| MirMachine |
0.2.13 |
MirMachine |
2024-02-19 12:31:10 |
| cellsnake |
0.2.0.12 |
cellsnake |
2024-02-18 12:07:06 |
| rnaseeker |
1.0.0 |
RNA-seq scripts and libraries |
2024-01-29 04:13:12 |
| CPAT |
3.0.5 |
CPAT (Coding Potential Assessment Tool). |
2024-01-25 18:17:16 |
| linearpartition-unofficial |
0.2 |
Python interface to LinearPartition, a linear-time RNA secondary structure prediction tool |
2024-01-20 07:13:18 |
| promotercalculator |
1.2.2 |
Salis Lab's promoter-calculator (Barrick Lab Fork) |
2023-12-18 21:14:48 |
| topicvelo |
0.0.2 |
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems |
2023-12-12 22:54:16 |
| deepprotein |
0.0.0 |
General Framework for Deep Learning on Macro Molecules |
2023-12-01 08:32:05 |
| RnaBench |
0.1.2 |
RNA benchmarking tools and utilities. |
2023-10-31 14:29:05 |
| entrain |
0.0.79 |
A single-cell analysis package to elucidate environmental factors controlling cell differentiation in RNA velocity and spatial datasets. |
2023-10-27 01:50:20 |
| rrmscorer |
1.0.9 |
RRM-RNA score predictor |
2023-10-10 11:00:35 |
| congas |
0.0.78 |
Copy Number genotyping from single cell RNA sequencing |
2023-10-03 10:11:09 |
| bookend-rna |
1.2.1 |
End-guided transcript assembler for short and long RNA-seq reads. |
2023-09-25 14:57:47 |
| cmdrnafold |
0.0.1 |
Primitive Vienna RNA fold interface via the commandline. |
2023-09-13 22:04:14 |
| UTRBERT |
1.0.1 |
Deciphering 3'UTR mediated gene regulation using interpretable deep representation learning |
2023-08-29 14:15:08 |